Variant report

Variant	rs10142479
Chromosome Location	chr14:39733476-39733477
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000258941	TF binding region
CTAGE5	TF binding region
ENSG00000259083	Chromatin interaction
ENSG00000100934	Chromatin interaction
ENSG00000100941	Chromatin interaction
ENSG00000258651	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10142523	0.83[ASN][1000 genomes]
rs10144445	0.80[ASN][1000 genomes]
rs11622951	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12881376	0.86[ASN][1000 genomes]
rs17092065	0.83[ASN][1000 genomes]
rs4902459	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902460	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61998553	0.86[ASN][1000 genomes]
rs6571911	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6571912	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7141840	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7147869	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7153523	0.85[ASN][1000 genomes]
rs8006319	0.90[ASN][1000 genomes]
rs9743804	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053133	chr14:39657535-39770729	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39703600-39735400	Weak transcription	Pancreas	Pancrea
2	chr14:39704400-39734400	Weak transcription	Duodenum Mucosa	Duodenum
3	chr14:39728400-39734400	Weak transcription	Fetal Intestine Large	intestine
4	chr14:39728600-39734000	Weak transcription	HepG2	liver
5	chr14:39728600-39735600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr14:39729200-39734600	Weak transcription	Fetal Intestine Small	intestine
7	chr14:39732400-39734000	Weak transcription	Fetal Heart	heart
8	chr14:39733400-39733600	ZNF genes & repeats	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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