Variant report
| Variant | rs10144445 |
|---|---|
| Chromosome Location | chr14:39695362-39695363 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000100941 | Chromatin interaction |
| ENSG00000258940 | Chromatin interaction |
| ENSG00000150527 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10137623 | 0.86[ASN][1000 genomes] |
| rs10142479 | 0.80[ASN][1000 genomes] |
| rs11622951 | 0.82[ASN][1000 genomes] |
| rs17092065 | 0.85[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1998193 | 0.86[ASN][1000 genomes] |
| rs2025027 | 0.86[ASN][1000 genomes] |
| rs2025028 | 0.86[ASN][1000 genomes] |
| rs2164066 | 0.81[ASN][1000 genomes] |
| rs2415537 | 0.86[ASN][1000 genomes] |
| rs28502509 | 0.86[ASN][1000 genomes] |
| rs35305286 | 0.84[ASN][1000 genomes] |
| rs4902459 | 0.80[ASN][1000 genomes] |
| rs4902460 | 0.80[ASN][1000 genomes] |
| rs56167516 | 0.84[ASN][1000 genomes] |
| rs6571911 | 0.80[ASN][1000 genomes] |
| rs6571912 | 0.80[ASN][1000 genomes] |
| rs7141840 | 0.93[ASN][1000 genomes] |
| rs7147869 | 0.80[ASN][1000 genomes] |
| rs7153523 | 0.83[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs8006319 | 0.83[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs8019368 | 0.81[ASN][1000 genomes] |
| rs9322996 | 0.86[ASN][1000 genomes] |
| rs9743804 | 0.85[EUR][1000 genomes];0.95[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1246 | chr14:39656597-39701520 | Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription | TF binding regionChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 2 | nsv1053133 | chr14:39657535-39770729 | Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 3 | nsv977619 | chr14:39690884-39697666 | Enhancers Flanking Active TSS Weak transcription | TF binding regionChromatin interactive region | 7 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:39674000-39705400 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
| 2 | chr14:39694000-39696600 | Weak transcription | HepG2 | liver |
