Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:39708069..39709628-chr14:39711747..39713367,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10137623	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs10142479	0.83[ASN][1000 genomes]
rs10144445	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11622951	0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12433610	0.89[JPT][hapmap]
rs1980609	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs1998193	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs2025027	0.95[JPT][hapmap]
rs2025028	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs28502509	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs4902459	0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs4902460	0.83[ASN][1000 genomes]
rs6571911	0.83[ASN][1000 genomes]
rs6571912	0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs6571921	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs7141840	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7147869	0.83[ASN][1000 genomes]
rs7153074	0.85[JPT][hapmap]
rs7153523	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8006319	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9322996	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs9743804	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053133	chr14:39657535-39770729	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39703600-39735400	Weak transcription	Pancreas	Pancrea
2	chr14:39704400-39734400	Weak transcription	Duodenum Mucosa	Duodenum
3	chr14:39706200-39715800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr14:39708600-39710400	Strong transcription	Liver	Liver
5	chr14:39708600-39713400	Strong transcription	Fetal Intestine Large	intestine
6	chr14:39708800-39710000	Weak transcription	HepG2	liver
7	chr14:39708800-39710600	Weak transcription	Fetal Intestine Small	intestine
8	chr14:39708800-39718000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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