Variant report

Variant	rs10142746
Chromosome Location	chr14:82020768-82020769
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10047898	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10131720	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10132734	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10137272	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10144172	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10145556	1.00[AMR][1000 genomes]
rs10150824	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11846666	1.00[ASN][1000 genomes]
rs11848548	1.00[ASN][1000 genomes]
rs11851475	1.00[ASN][1000 genomes]
rs17115576	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17115590	1.00[ASN][1000 genomes]
rs28495615	0.89[AFR][1000 genomes]
rs28502051	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56943057	1.00[AMR][1000 genomes]
rs60944245	1.00[ASN][1000 genomes]
rs7154698	1.00[ASN][1000 genomes]
rs7158559	1.00[ASN][1000 genomes]
rs74064993	1.00[ASN][1000 genomes]
rs8008992	1.00[ASN][1000 genomes]
rs8020513	1.00[ASN][1000 genomes]
rs9323706	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047694	chr14:81831147-82534026	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv542145	chr14:81831147-82534026	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv902120	chr14:81953242-82067555	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv565299	chr14:81983027-82586324	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:82020200-82021200	Enhancers	GM12878-XiMat	blood
2	chr14:82020200-82021600	Enhancers	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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