Variant report

Variant	rs10150824
Chromosome Location	chr14:81977587-81977588
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:81970719..81974243-chr14:81975754..81978967,3	K562	blood:
2	chr14:81976957..81979608-chr14:81999318..82001372,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000071537	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10047898	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10131720	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10132734	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10137272	1.00[ASW][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10142746	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10145556	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17115576	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28495615	0.95[AFR][1000 genomes]
rs28502051	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56943057	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61404288	1.00[EUR][1000 genomes]
rs73346179	1.00[EUR][1000 genomes]
rs8012824	1.00[EUR][1000 genomes]
rs9323706	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047694	chr14:81831147-82534026	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv542145	chr14:81831147-82534026	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv902120	chr14:81953242-82067555	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81938800-81977600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr14:81941800-81985600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr14:81948800-81977800	Strong transcription	Primary B cells from cord blood	blood
4	chr14:81960200-81983600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr14:81960400-81985800	Weak transcription	Stomach Mucosa	stomach
6	chr14:81962600-81977600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr14:81964000-81980000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr14:81964200-81985200	Weak transcription	K562	blood
9	chr14:81964400-81983000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr14:81967600-81999600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr14:81970400-81983200	Weak transcription	Hela-S3	cervix
12	chr14:81970800-81983200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr14:81971200-81983600	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr14:81971400-81978600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr14:81971400-81978800	Weak transcription	Fetal Stomach	stomach
16	chr14:81972400-81977600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr14:81972600-81978800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr14:81972600-81979600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr14:81972600-81979800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr14:81972600-81980200	Weak transcription	Colonic Mucosa	Colon
21	chr14:81972600-81983600	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr14:81972600-81987000	Weak transcription	NH-A	brain
23	chr14:81972600-81989800	Weak transcription	HMEC	breast
24	chr14:81972800-81977600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr14:81972800-81982600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr14:81972800-81983200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr14:81973000-81979400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr14:81973200-81983000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr14:81973400-81980000	Weak transcription	Right Ventricle	heart
30	chr14:81973400-81980800	Weak transcription	Pancreas	Pancrea
31	chr14:81973400-81982400	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr14:81973600-81979600	Weak transcription	Brain Germinal Matrix	brain
33	chr14:81973800-81977600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr14:81973800-81977600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr14:81973800-81977800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr14:81973800-81977800	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr14:81973800-81978600	Weak transcription	Fetal Muscle Trunk	muscle
38	chr14:81973800-81978600	Weak transcription	Thymus	Thymus
39	chr14:81973800-81979800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr14:81973800-81982400	Weak transcription	Fetal Thymus	thymus
41	chr14:81973800-81983200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr14:81973800-81988800	Weak transcription	Spleen	Spleen
43	chr14:81973800-81999400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr14:81973800-81999400	Weak transcription	Esophagus	oesophagus
45	chr14:81974200-81978600	Weak transcription	Lung	lung
46	chr14:81974200-81979800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr14:81974200-81983000	Weak transcription	NHEK	skin
48	chr14:81974200-81983200	Weak transcription	Gastric	stomach
49	chr14:81974200-81983400	Weak transcription	HSMM	muscle
50	chr14:81974400-81979200	Weak transcription	Stomach Smooth Muscle	stomach

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