Variant report

Variant	rs10145556
Chromosome Location	chr14:81998777-81998778
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:81929424..81932136-chr14:81997102..81999064,2	K562	blood:
2	chr14:81686218..81688258-chr14:81998585..82000595,3	MCF-7	breast:
3	chr14:81998367..82001361-chr15:65596794..65598307,2	MCF-7	breast:
4	chr14:81995745..81998818-chr14:81999880..82001620,3	K562	blood:

Variant related genes	Relation type
ENSG00000200156	Chromatin interaction
ENSG00000165417	Chromatin interaction
ENSG00000071537	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10047898	1.00[AMR][1000 genomes]
rs10131720	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10132734	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10137272	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10142746	1.00[AMR][1000 genomes]
rs10150824	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17115576	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28502051	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56943057	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61404288	1.00[EUR][1000 genomes]
rs73346179	1.00[EUR][1000 genomes]
rs8012824	1.00[EUR][1000 genomes]
rs9323706	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047694	chr14:81831147-82534026	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv542145	chr14:81831147-82534026	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv902120	chr14:81953242-82067555	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv565299	chr14:81983027-82586324	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv1803387	chr14:81995306-82009830	Flanking Active TSS Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv1803430	chr14:81995306-82009830	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81967600-81999600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:81973800-81999400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr14:81973800-81999400	Weak transcription	Esophagus	oesophagus
4	chr14:81981200-81999400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr14:81983200-81999400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr14:81983800-81999400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr14:81984000-81998800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr14:81984200-81999200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr14:81984400-81999400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr14:81986400-81998800	Weak transcription	Hela-S3	cervix
11	chr14:81987600-81998800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr14:81989800-81999200	Weak transcription	Colonic Mucosa	Colon
13	chr14:81990200-81999200	Weak transcription	Aorta	Aorta
14	chr14:81990800-81999400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr14:81991200-81998800	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr14:81991200-81999400	Weak transcription	Lung	lung
17	chr14:81991400-81999000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr14:81991600-81999400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr14:81991800-81999200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr14:81993000-81999200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr14:81993200-81998800	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr14:81993200-81999400	Weak transcription	Fetal Thymus	thymus
23	chr14:81993600-81999000	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr14:81993800-81998800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr14:81993800-81998800	Weak transcription	Fetal Lung	lung
26	chr14:81993800-81999000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr14:81993800-81999200	Weak transcription	Fetal Muscle Trunk	muscle
28	chr14:81993800-81999400	Weak transcription	Placenta	Placenta
29	chr14:81994200-81998800	Enhancers	Primary T helper cells fromperipheralblood	blood
30	chr14:81994600-81999400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
31	chr14:81994800-81999000	Enhancers	Primary neutrophils fromperipheralblood	blood
32	chr14:81994800-81999200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
33	chr14:81995600-81998800	Enhancers	Adipose Nuclei	Adipose
34	chr14:81995600-81998800	Enhancers	Brain Anterior Caudate	brain
35	chr14:81996000-81999000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
36	chr14:81996800-81998800	Weak transcription	Right Atrium	heart
37	chr14:81996800-81998800	Enhancers	HepG2	liver
38	chr14:81996800-81998800	Weak transcription	K562	blood
39	chr14:81997200-81998800	Enhancers	Primary T killer memory cells from peripheral blood	blood
40	chr14:81997200-81998800	Enhancers	Fetal Heart	heart
41	chr14:81997400-81998800	Enhancers	Stomach Smooth Muscle	stomach
42	chr14:81997400-81999000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
43	chr14:81997600-81998800	Enhancers	Brain Hippocampus Middle	brain
44	chr14:81997600-82000200	Active TSS	Pancreas	Pancrea
45	chr14:81997800-81998800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr14:81997800-81999000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
47	chr14:81997800-81999000	Enhancers	Primary B cells from cord blood	blood
48	chr14:81997800-81999000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
49	chr14:81997800-81999200	Enhancers	Primary T cells fromperipheralblood	blood
50	chr14:81998000-81998800	Enhancers	Brain Cingulate Gyrus	brain

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