Variant report

Variant	rs17115576
Chromosome Location	chr14:82029572-82029573
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10047898	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10131720	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10132734	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10137272	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10142746	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10144172	0.86[AFR][1000 genomes]
rs10145556	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10150824	1.00[ASW][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12101289	1.00[EUR][1000 genomes]
rs17115812	1.00[EUR][1000 genomes]
rs28495615	0.84[AFR][1000 genomes]
rs28502051	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56943057	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61404288	1.00[EUR][1000 genomes]
rs73346179	1.00[EUR][1000 genomes]
rs8012824	1.00[EUR][1000 genomes]
rs9323706	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047694	chr14:81831147-82534026	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv542145	chr14:81831147-82534026	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv902120	chr14:81953242-82067555	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv565299	chr14:81983027-82586324	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:82026600-82030000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr14:82027400-82030200	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr14:82028000-82031600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr14:82028200-82030400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr14:82028800-82030000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
6	chr14:82029000-82029800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr14:82029000-82029800	Enhancers	HSMM	muscle
8	chr14:82029200-82029600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
9	chr14:82029200-82029600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr14:82029200-82029800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr14:82029200-82030000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr14:82029200-82030000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr14:82029200-82030600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr14:82029400-82029600	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr14:82029400-82029600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
16	chr14:82029400-82030000	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr14:82029400-82030000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr14:82029400-82030200	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr14:82029400-82031800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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