Variant report

Variant	rs10143578
Chromosome Location	chr14:70870975-70870976
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10135431	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.92[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10139883	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10139978	1.00[CHB][hapmap];0.89[JPT][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs10140251	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10143078	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.92[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10146632	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10147036	0.94[ASN][1000 genomes]
rs10148702	1.00[CHB][hapmap];0.89[JPT][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10148733	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11848791	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12100666	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17107991	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1892284	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs28423673	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28600078	0.88[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs28656212	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28781332	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28866786	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3764181	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55736348	0.93[AMR][1000 genomes]
rs57026128	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs58161097	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs58601276	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59321651	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60005479	0.93[AMR][1000 genomes]
rs60455014	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6573961	1.00[CHB][hapmap];0.89[JPT][hapmap];0.92[ASN][1000 genomes]
rs7141619	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7147252	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7149583	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7160839	1.00[CEU][hapmap]
rs73291950	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8018933	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9323539	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902075	chr14:70612618-70919016	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70827200-70882600	Weak transcription	A549	lung
2	chr14:70827200-70882600	Weak transcription	NH-A	brain
3	chr14:70832000-70872400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr14:70833800-70882400	Weak transcription	NHDF-Ad	bronchial
5	chr14:70838600-70882400	Weak transcription	Hela-S3	cervix
6	chr14:70840200-70882400	Weak transcription	Colon Smooth Muscle	Colon
7	chr14:70840200-70882600	Weak transcription	Colonic Mucosa	Colon
8	chr14:70840800-70882800	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr14:70841000-70882600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr14:70841400-70879800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr14:70842600-70882400	Weak transcription	Fetal Kidney	kidney
12	chr14:70846800-70878600	Weak transcription	HSMM	muscle
13	chr14:70848400-70882400	Weak transcription	Brain Angular Gyrus	brain
14	chr14:70848400-70882800	Weak transcription	Psoas Muscle	Psoas
15	chr14:70848400-70883000	Weak transcription	HSMMtube	muscle
16	chr14:70848600-70882400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr14:70848600-70882800	Weak transcription	Fetal Muscle Leg	muscle
18	chr14:70848800-70882600	Weak transcription	Brain Substantia Nigra	brain
19	chr14:70853600-70882400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr14:70853800-70880800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr14:70854800-70882400	Weak transcription	Brain Anterior Caudate	brain
22	chr14:70855000-70875400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr14:70855200-70882400	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr14:70855600-70874400	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr14:70855600-70875600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr14:70856000-70882400	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr14:70858400-70873200	Weak transcription	Small Intestine	intestine
28	chr14:70859000-70882800	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr14:70864600-70880000	Weak transcription	Esophagus	oesophagus
30	chr14:70864800-70875600	Weak transcription	Liver	Liver
31	chr14:70864800-70875600	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr14:70864800-70875800	Weak transcription	Placenta	Placenta
33	chr14:70864800-70877200	Weak transcription	Stomach Smooth Muscle	stomach
34	chr14:70865000-70873400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr14:70865000-70876000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr14:70865000-70878400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr14:70865000-70882400	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr14:70865000-70882800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr14:70865200-70882800	Weak transcription	Aorta	Aorta
40	chr14:70865400-70875600	Weak transcription	Brain Cingulate Gyrus	brain
41	chr14:70865400-70875600	Weak transcription	Fetal Lung	lung
42	chr14:70865400-70877400	Weak transcription	Primary B cells from cord blood	blood
43	chr14:70865400-70882600	Weak transcription	Brain Hippocampus Middle	brain
44	chr14:70865600-70880200	Weak transcription	HepG2	liver
45	chr14:70865800-70875400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr14:70865800-70882600	Weak transcription	Adipose Nuclei	Adipose
47	chr14:70866000-70882600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr14:70866200-70875400	Weak transcription	Fetal Intestine Large	intestine
49	chr14:70866200-70878200	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr14:70866400-70872800	Weak transcription	Pancreas	Pancrea

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