Variant report

Variant	rs28781332
Chromosome Location	chr14:70964664-70964665
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10129764	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10129815	0.84[EUR][1000 genomes]
rs10133011	0.93[ASN][1000 genomes]
rs10135431	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10138530	0.98[ASN][1000 genomes]
rs10139100	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10139883	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10140251	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10143078	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10143578	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10146471	0.98[ASN][1000 genomes]
rs10146632	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10148733	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11848791	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12100666	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17107991	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1953801	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28423673	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28567569	0.93[ASN][1000 genomes]
rs28656212	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28781359	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28831768	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28866786	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3764181	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55736348	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57026128	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58161097	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58601276	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs59321651	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs59911766	0.98[ASN][1000 genomes]
rs60005479	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60455014	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7141619	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7147252	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7149583	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7160839	0.95[ASN][1000 genomes]
rs73291950	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8013640	0.98[ASN][1000 genomes]
rs8018933	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9323539	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv565042	chr14:70951234-71011734	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1050615	chr14:70954149-71013235	Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv2763072	chr14:70954149-71013247	Strong transcription ZNF genes & repeats Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70955600-70965600	Weak transcription	Right Ventricle	heart
2	chr14:70956600-70966600	Weak transcription	Left Ventricle	heart
3	chr14:70958600-70966600	Weak transcription	Brain Anterior Caudate	brain
4	chr14:70958600-70967200	Weak transcription	Brain Angular Gyrus	brain
5	chr14:70958600-70989000	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr14:70958800-70964800	Weak transcription	Brain Cingulate Gyrus	brain
7	chr14:70958800-70993800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr14:70959200-70965400	Weak transcription	Brain Hippocampus Middle	brain
9	chr14:70959200-70965800	Weak transcription	Adipose Nuclei	Adipose
10	chr14:70959600-70965000	Weak transcription	Colon Smooth Muscle	Colon
11	chr14:70962400-70965000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr14:70963200-70964800	ZNF genes & repeats	Aorta	Aorta
13	chr14:70963200-70965000	Strong transcription	Brain Inferior Temporal Lobe	brain
14	chr14:70963200-70965200	Strong transcription	Stomach Smooth Muscle	stomach
15	chr14:70963800-70964800	Weak transcription	Spleen	Spleen
16	chr14:70963800-70965000	Strong transcription	Skeletal Muscle Male	skeletal muscle
17	chr14:70964200-70967200	Weak transcription	Liver	Liver
18	chr14:70964400-70964800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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