Variant report

Variant	rs9323539
Chromosome Location	chr14:70937424-70937425
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10129764	0.90[ASN][1000 genomes]
rs10133011	0.98[ASN][1000 genomes]
rs10135431	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10138530	0.93[ASN][1000 genomes]
rs10139100	0.85[ASN][1000 genomes]
rs10139883	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10140251	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10143078	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10143578	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10146471	0.93[ASN][1000 genomes]
rs10146632	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10147036	0.88[EUR][1000 genomes]
rs10148733	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11848791	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12100666	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17107991	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1892284	0.88[EUR][1000 genomes]
rs1953801	0.95[ASN][1000 genomes]
rs28423673	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28567569	0.98[ASN][1000 genomes]
rs28656212	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28781332	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28781359	0.95[ASN][1000 genomes]
rs28831768	0.85[ASN][1000 genomes]
rs28866786	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3764181	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55736348	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57026128	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58161097	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58601276	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59321651	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs59911766	0.93[ASN][1000 genomes]
rs60005479	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60455014	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7141619	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7147252	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7149583	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7160839	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73291950	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8013640	0.93[ASN][1000 genomes]
rs8018933	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv983841	chr14:70935862-70939179	Enhancers Weak transcription Flanking Active TSS Strong transcription	TF binding region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70910600-70955600	Weak transcription	Left Ventricle	heart
2	chr14:70917000-70940200	Weak transcription	Aorta	Aorta
3	chr14:70921800-70940000	Weak transcription	Psoas Muscle	Psoas
4	chr14:70932400-70937600	Weak transcription	Adipose Nuclei	Adipose
5	chr14:70933400-70941200	Weak transcription	Brain Hippocampus Middle	brain
6	chr14:70934000-70937600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr14:70934200-70943800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr14:70935400-70940200	Weak transcription	Liver	Liver
9	chr14:70935600-70938200	Weak transcription	Brain Angular Gyrus	brain
10	chr14:70936000-70943800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr14:70936600-70939200	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr14:70936800-70939800	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr14:70937000-70937600	Enhancers	H9 Cell Line	embryonic stem cell
14	chr14:70937000-70938200	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr14:70937000-70939800	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr14:70937200-70937600	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr14:70937400-70937800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr14:70937400-70938400	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr14:70937400-70939200	Enhancers	H1 Cell Line	embryonic stem cell
20	chr14:70937400-70939200	Enhancers	HUES6 Cell Line	embryonic stem cell

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