Variant report

Variant	rs10149870
Chromosome Location	chr14:21568398-21568399
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:21538435..21540879-chr14:21565246..21568452,4	K562	blood:
2	chr14:21535130..21541812-chr14:21564802..21576767,22	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165801	Chromatin interaction
ENSG00000165795	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10145468	1.00[AMR][1000 genomes]
rs10151559	1.00[AMR][1000 genomes]
rs10151757	1.00[AMR][1000 genomes]
rs55637360	1.00[AMR][1000 genomes]
rs73581754	1.00[AMR][1000 genomes]
rs73581777	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530009	chr14:21377022-22044608	Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	111 gene(s)	inside rSNPs	diseases
2	nsv530769	chr14:21407536-22139126	Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
3	nsv916319	chr14:21507092-21896590	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
4	nsv1036762	chr14:21507093-22101805	Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
5	nsv541976	chr14:21507093-22101805	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
6	nsv826882	chr14:21511021-21604201	Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
7	nsv530770	chr14:21526410-21852363	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
8	nsv525724	chr14:21540863-21574690	Active TSS Flanking Active TSS Genic enhancers Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:21566000-21570400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr14:21567200-21568400	Flanking Active TSS	Stomach Smooth Muscle	stomach
3	chr14:21567200-21568400	Flanking Active TSS	NHEK	skin
4	chr14:21567400-21568400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr14:21567400-21568400	Enhancers	Pancreas	Pancrea
6	chr14:21567400-21568400	Flanking Active TSS	Hela-S3	cervix
7	chr14:21567400-21569600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr14:21567400-21570000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr14:21567400-21571400	Weak transcription	Small Intestine	intestine
10	chr14:21567400-21571400	Enhancers	Stomach Mucosa	stomach
11	chr14:21567400-21571600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr14:21567600-21568400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr14:21567600-21570000	Enhancers	K562	blood
14	chr14:21567600-21570800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr14:21567600-21571400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr14:21567800-21568400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr14:21567800-21568400	Enhancers	Fetal Muscle Leg	muscle
18	chr14:21567800-21568600	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr14:21567800-21568800	Enhancers	Rectal Mucosa Donor 29	rectum
20	chr14:21567800-21569000	Enhancers	Rectal Mucosa Donor 31	rectum
21	chr14:21567800-21569200	Enhancers	Colonic Mucosa	Colon
22	chr14:21567800-21569200	Enhancers	Fetal Intestine Large	intestine
23	chr14:21567800-21569400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr14:21567800-21569400	Active TSS	Duodenum Mucosa	Duodenum
25	chr14:21567800-21570000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr14:21567800-21570000	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr14:21567800-21570200	Weak transcription	Fetal Muscle Trunk	muscle
28	chr14:21567800-21570600	Weak transcription	Lung	lung
29	chr14:21567800-21570600	Weak transcription	Spleen	Spleen
30	chr14:21567800-21570600	Enhancers	HepG2	liver
31	chr14:21567800-21570800	Weak transcription	Liver	Liver
32	chr14:21567800-21571000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr14:21567800-21571200	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr14:21567800-21571200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr14:21567800-21571200	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr14:21567800-21571200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr14:21567800-21571400	Weak transcription	Primary monocytes fromperipheralblood	blood
38	chr14:21567800-21571400	Weak transcription	Primary T cells from cord blood	blood
39	chr14:21567800-21571400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr14:21567800-21571400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr14:21567800-21571400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr14:21567800-21571400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr14:21567800-21571400	Enhancers	Esophagus	oesophagus
44	chr14:21567800-21571400	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr14:21567800-21571400	Weak transcription	Left Ventricle	heart
46	chr14:21567800-21571400	Weak transcription	Psoas Muscle	Psoas
47	chr14:21567800-21571400	Weak transcription	Right Ventricle	heart
48	chr14:21567800-21571600	Weak transcription	Aorta	Aorta
49	chr14:21567800-21571600	Weak transcription	Monocytes-CD14+_RO01746	blood
50	chr14:21567800-21572000	Weak transcription	Ovary	ovary

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