Variant report

Variant	rs10151559
Chromosome Location	chr14:21584622-21584623
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr14:21584590-21584640	GM12891	blood:	n/a
2	chr14:21584590-21584640	H1-hESC	embryonic stem cell:	embryo
3	chr14:21584590-21584640	PFSK-1	brain:	n/a
4	chr14:21584590-21584640	K562	blood:	n/a
5	chr14:21584590-21584640	NT2-D1	testis:	n/a
6	chr14:21584590-21584640	HCF	heart:	n/a
7	chr14:21584590-21584640	HCPEpiC	choroid plexus:	n/a
8	chr14:21584590-21584640	A549	lung:	n/a
9	chr14:21584590-21584640	CMK	blood:	n/a
10	chr14:21584590-21584640	ProgFib	skin:	n/a
11	chr14:21584590-21584640	SK-N-SH	brain:	n/a
12	chr14:21584590-21584640	HCT-116	colon:	n/a
13	chr14:21584590-21584640	HEK293	kidney:	embryo
14	chr14:21584590-21584640	HRE	kidney:	n/a
15	chr14:21584590-21584640	NH-A	brain:	n/a
16	chr14:21584590-21584640	GM12878	blood:	n/a
17	chr14:21584590-21584640	AG09319	gingival:	n/a
18	chr14:21584590-21584640	HRPEpiC	eye:	n/a
19	chr14:21584590-21584640	Hela-S3	cervix:	n/a
20	chr14:21584590-21584640	HL-60	blood:	n/a
21	chr14:21584590-21584640	AG10803	skin:	n/a
22	chr14:21584590-21584640	HAEpiC	amniotic membrane:	n/a
23	chr14:21584590-21584640	NHDF-neo	bronchial:	n/a
24	chr14:21584590-21584640	HMEC	breast:	n/a
25	chr14:21584590-21584640	SK-N-MC	brain:	n/a
26	chr14:21584590-21584640	T-47D	breast:	n/a
27	chr14:21584590-21584640	SKMC	muscle:	n/a
28	chr14:21584590-21584640	AG04450	lung:	fetal
29	chr14:21584590-21584640	SK-N-SH_RA	brain:	n/a
30	chr14:21584590-21584640	ovcar-3	ovarian:	n/a
31	chr14:21584590-21584640	Jurkat	blood:	n/a
32	chr14:21584590-21584640	AoSMC	blood vessel:	n/a
33	chr14:21584590-21584640	HNPCEpiC	eye:	n/a
34	chr14:21584590-21584640	HRCEpiC	kidney:	n/a
35	chr14:21584590-21584640	LNCaP	prostate:	n/a
36	chr14:21584590-21584640	NB4	blood:	n/a
37	chr14:21584590-21584640	GM19239	blood:	n/a
38	chr14:21584590-21584640	SAEC	small airway:	n/a
39	chr14:21584590-21584640	AG04449	skin:	fetal
40	chr14:21584590-21584640	HUVEC	blood vessel:	n/a
41	chr14:21584590-21584640	HEEpiC	esophagus:	n/a
42	chr14:21584590-21584640	IMR90	lung:	fetal
43	chr14:21584590-21584640	HIPEpiC	eye:	n/a
44	chr14:21584590-21584640	ECC-1	luminal epithelium:	n/a
45	chr14:21584590-21584640	GM12892	blood:	n/a
46	chr14:21584590-21584640	AG09309	skin:	n/a
47	chr14:21584590-21584640	MCF-7	breast:	n/a
48	chr14:21584590-21584640	RPTEC	kidney:	n/a
49	chr14:21584590-21584640	U87	brain:	n/a
50	chr14:21584590-21584640	HCM	heart:	n/a

No data

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C14orf176-1	chr14:21584622-21584862	ENSG00000178107

No data

Variant related genes	Relation type
RNU6-252P	CpG island
ENSG00000258722	CpG island

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10145468	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10149870	1.00[AMR][1000 genomes]
rs10151757	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2234637	1.00[MEX][hapmap]
rs2234638	1.00[TSI][hapmap]
rs2771331	1.00[TSI][hapmap]
rs4387520	1.00[TSI][hapmap]
rs55637360	1.00[AMR][1000 genomes]
rs6413532	1.00[LWK][hapmap];1.00[TSI][hapmap]
rs73581754	1.00[AMR][1000 genomes]
rs73581777	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530009	chr14:21377022-22044608	Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	111 gene(s)	inside rSNPs	diseases
2	nsv530769	chr14:21407536-22139126	Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
3	nsv916319	chr14:21507092-21896590	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
4	nsv1036762	chr14:21507093-22101805	Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
5	nsv541976	chr14:21507093-22101805	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
6	nsv826882	chr14:21511021-21604201	Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
7	nsv530770	chr14:21526410-21852363	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
8	nsv524093	chr14:21574690-21652897	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
9	nsv1043570	chr14:21575068-21899964	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
10	nsv541977	chr14:21575068-21899964	Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:21576000-21585600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr14:21582600-21591000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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