Variant report

Variant	rs55637360
Chromosome Location	chr14:21461848-21461849
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:21458248..21461851-chr14:21463411..21466207,3	K562	blood:
2	chr14:21441390..21444157-chr14:21460821..21462401,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165792	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10145468	1.00[AMR][1000 genomes]
rs10149870	1.00[AMR][1000 genomes]
rs10151559	1.00[AMR][1000 genomes]
rs10151757	1.00[AMR][1000 genomes]
rs12589568	1.00[AMR][1000 genomes]
rs73581754	1.00[AMR][1000 genomes]
rs73581777	1.00[AMR][1000 genomes]
rs73584040	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758349	chr14:21216108-21471614	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	esv2759972	chr14:21216108-21471614	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
3	nsv427936	chr14:21216108-21531783	Flanking Active TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
4	nsv428293	chr14:21216108-21531783	Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
5	nsv832740	chr14:21332060-21545052	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	45 gene(s)	inside rSNPs	diseases
6	nsv470622	chr14:21338824-21469151	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
7	nsv563847	chr14:21338824-21469151	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
8	nsv530009	chr14:21377022-22044608	Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	111 gene(s)	inside rSNPs	diseases
9	nsv530769	chr14:21407536-22139126	Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
10	nsv901475	chr14:21426282-21465489	Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:21458800-21462000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:21458800-21462400	Weak transcription	Esophagus	oesophagus
3	chr14:21458800-21467400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr14:21459000-21462600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr14:21459200-21462600	Weak transcription	Gastric	stomach
6	chr14:21459400-21463000	Weak transcription	Stomach Mucosa	stomach
7	chr14:21459600-21462000	Weak transcription	Small Intestine	intestine
8	chr14:21459600-21462400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr14:21459600-21462400	Weak transcription	NHLF	lung
10	chr14:21459600-21464600	Strong transcription	HSMM	muscle
11	chr14:21459600-21464800	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr14:21459600-21465000	Strong transcription	A549	lung
13	chr14:21459600-21465400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr14:21459600-21465600	Strong transcription	HUES48 Cell Line	embryonic stem cell
15	chr14:21459600-21465600	Strong transcription	HUES64 Cell Line	embryonic stem cell
16	chr14:21459600-21465600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr14:21459600-21465800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr14:21459600-21465800	Strong transcription	HUES6 Cell Line	embryonic stem cell
19	chr14:21459600-21466000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr14:21459600-21466000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr14:21459600-21466000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
22	chr14:21459600-21466000	Strong transcription	Muscle Satellite Cultured Cells	--
23	chr14:21459600-21466000	Strong transcription	Fetal Muscle Leg	muscle
24	chr14:21459600-21466000	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr14:21459600-21466600	Strong transcription	Brain Hippocampus Middle	brain
26	chr14:21459600-21466800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr14:21459800-21464600	Strong transcription	ES-I3 Cell Line	embryonic stem cell
28	chr14:21459800-21464600	Strong transcription	Placenta Amnion	Placenta Amnion
29	chr14:21459800-21465800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
30	chr14:21459800-21466000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr14:21459800-21466600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr14:21460000-21464000	Strong transcription	Rectal Mucosa Donor 29	rectum
33	chr14:21460000-21464200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr14:21460000-21465000	Strong transcription	HSMMtube	muscle
35	chr14:21460000-21465200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr14:21460000-21465200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr14:21460000-21465200	Strong transcription	Osteobl	bone
38	chr14:21460000-21465400	Strong transcription	H1 Cell Line	embryonic stem cell
39	chr14:21460000-21465400	Strong transcription	H9 Cell Line	embryonic stem cell
40	chr14:21460000-21465600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr14:21460000-21465600	Strong transcription	Fetal Muscle Trunk	muscle
42	chr14:21460000-21465600	Strong transcription	Placenta	Placenta
43	chr14:21460000-21465800	Strong transcription	Brain Substantia Nigra	brain
44	chr14:21460000-21465800	Strong transcription	NHEK	skin
45	chr14:21460000-21466000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr14:21460000-21466400	Strong transcription	Primary B cells from peripheral blood	blood
47	chr14:21460000-21466400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr14:21460000-21466400	Strong transcription	Brain Cingulate Gyrus	brain
49	chr14:21460200-21464000	Strong transcription	Rectal Mucosa Donor 31	rectum
50	chr14:21460200-21464800	Strong transcription	Primary T cells from cord blood	blood

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