Variant report

Variant	rs73581777
Chromosome Location	chr14:21455655-21455656
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:20920787..20923218-chr14:21454532..21456112,2	MCF-7	breast:
2	chr14:21454547..21456911-chr14:21472680..21474390,2	MCF-7	breast:
3	chr14:21345187..21348103-chr14:21455224..21457829,2	K562	blood:
4	chr14:21454398..21456867-chr14:21465877..21467429,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258471	Chromatin interaction
ENSG00000165794	Chromatin interaction
ENSG00000092094	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10145468	1.00[AMR][1000 genomes]
rs10149870	1.00[AMR][1000 genomes]
rs10151559	1.00[AMR][1000 genomes]
rs10151757	1.00[AMR][1000 genomes]
rs12589568	1.00[AMR][1000 genomes]
rs55637360	1.00[AMR][1000 genomes]
rs73581754	1.00[AMR][1000 genomes]
rs73584040	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758349	chr14:21216108-21471614	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	esv2759972	chr14:21216108-21471614	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
3	nsv427936	chr14:21216108-21531783	Flanking Active TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
4	nsv428293	chr14:21216108-21531783	Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
5	nsv832740	chr14:21332060-21545052	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	45 gene(s)	inside rSNPs	diseases
6	nsv1044554	chr14:21334087-21456092	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
7	nsv470622	chr14:21338824-21469151	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
8	nsv563847	chr14:21338824-21469151	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
9	nsv530009	chr14:21377022-22044608	Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	111 gene(s)	inside rSNPs	diseases
10	nsv530769	chr14:21407536-22139126	Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
11	nsv901475	chr14:21426282-21465489	Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
12	nsv1054126	chr14:21432455-21456092	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:21451800-21456600	Weak transcription	Fetal Intestine Small	intestine
2	chr14:21453000-21457600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr14:21454200-21456600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr14:21454200-21457400	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr14:21454200-21457800	Enhancers	Placenta Amnion	Placenta Amnion
6	chr14:21454400-21455800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr14:21454400-21455800	Enhancers	Muscle Satellite Cultured Cells	--
8	chr14:21454400-21456000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr14:21454400-21456200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr14:21454400-21456400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr14:21454400-21456400	Enhancers	NHEK	skin
12	chr14:21454400-21456800	Enhancers	Hela-S3	cervix
13	chr14:21454400-21457200	Enhancers	NH-A	brain
14	chr14:21454400-21457400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr14:21454400-21457400	Enhancers	HMEC	breast
16	chr14:21454600-21455800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr14:21454600-21455800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr14:21454600-21455800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr14:21454600-21456000	Enhancers	NHDF-Ad	bronchial
20	chr14:21454600-21456200	Enhancers	K562	blood
21	chr14:21454600-21456200	Enhancers	NHLF	lung
22	chr14:21454600-21457000	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr14:21454600-21457200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr14:21454600-21457400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr14:21454800-21455800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr14:21454800-21456000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr14:21454800-21456200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr14:21455000-21456400	Weak transcription	Placenta	Placenta
29	chr14:21455000-21457200	Weak transcription	Ovary	ovary
30	chr14:21455000-21457200	Weak transcription	HSMMtube	muscle
31	chr14:21455200-21456800	Enhancers	Monocytes-CD14+_RO01746	blood
32	chr14:21455400-21456400	Enhancers	A549	lung
33	chr14:21455400-21457000	Weak transcription	HUVEC	blood vessel
34	chr14:21455400-21457200	Weak transcription	HSMM	muscle
35	chr14:21455600-21457000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr14:21455600-21457000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr14:21455600-21457200	Weak transcription	Osteobl	bone

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