Variant report

Variant	rs10151563
Chromosome Location	chr14:31721103-31721104
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:31720575..31722092-chr14:31768141..31769654,2	MCF-7	breast:
2	chr14:31708924..31710880-chr14:31720802..31723577,2	K562	blood:
3	chr14:31677416..31678964-chr14:31720140..31723072,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10132373	0.96[EUR][1000 genomes]
rs10135213	1.00[EUR][1000 genomes]
rs10138200	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10148827	0.94[EUR][1000 genomes]
rs1041088	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10872849	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11156660	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11156661	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11626839	0.96[CEU][hapmap];0.96[EUR][1000 genomes]
rs12184973	0.92[EUR][1000 genomes]
rs12434266	0.97[EUR][1000 genomes]
rs12588620	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12889162	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17660791	0.81[CEU][hapmap]
rs2146570	0.96[CEU][hapmap]
rs2378848	0.92[CEU][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4011661	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4981828	0.96[EUR][1000 genomes]
rs4981832	0.84[EUR][1000 genomes]
rs5024653	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs5024655	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61995523	0.95[EUR][1000 genomes]
rs6571402	0.95[EUR][1000 genomes]
rs6571403	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6571404	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7146274	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7147686	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs7156178	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs727675	0.82[EUR][1000 genomes]
rs7494025	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8022573	0.95[EUR][1000 genomes]
rs9788563	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901587	chr14:31501505-31752664	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1050054	chr14:31501703-31733642	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	esv2830427	chr14:31639110-32000034	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv1050597	chr14:31711248-31904761	Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:31707800-31730800	Weak transcription	Pancreas	Pancrea
2	chr14:31713800-31722200	Weak transcription	Lung	lung
3	chr14:31720200-31723800	Enhancers	HepG2	liver
4	chr14:31720400-31721200	Enhancers	Duodenum Mucosa	Duodenum
5	chr14:31720400-31721200	Enhancers	Sigmoid Colon	Sigmoid Colon
6	chr14:31720400-31721400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr14:31720400-31722600	Enhancers	Stomach Mucosa	stomach
8	chr14:31720600-31721200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
9	chr14:31720600-31721200	Enhancers	Small Intestine	intestine
10	chr14:31720600-31721200	Enhancers	HMEC	breast
11	chr14:31720600-31721200	Enhancers	K562	blood
12	chr14:31720600-31721200	Enhancers	NHEK	skin
13	chr14:31720600-31721600	Enhancers	Hela-S3	cervix
14	chr14:31720800-31721200	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr14:31720800-31721200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr14:31721000-31722800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr14:31721000-31726400	Weak transcription	Fetal Intestine Small	intestine
18	chr14:31721000-31726400	Weak transcription	Gastric	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links