Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:31675121..31677908-chr14:31743335..31745679,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000092148	Chromatin interaction

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10132373	0.81[EUR][1000 genomes]
rs10135213	0.84[EUR][1000 genomes]
rs10138200	0.84[EUR][1000 genomes]
rs10151563	0.84[EUR][1000 genomes]
rs1041088	0.84[EUR][1000 genomes]
rs11626839	0.81[EUR][1000 genomes]
rs12434266	0.82[EUR][1000 genomes]
rs12889162	0.84[EUR][1000 genomes]
rs12892246	0.90[ASN][1000 genomes]
rs12895352	0.90[ASN][1000 genomes]
rs17577629	1.00[ASN][1000 genomes]
rs17660791	0.91[ASN][1000 genomes]
rs17660955	1.00[ASN][1000 genomes]
rs2181420	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34159200	0.90[ASN][1000 genomes]
rs34737578	1.00[ASN][1000 genomes]
rs34777795	0.91[ASN][1000 genomes]
rs35330064	0.90[ASN][1000 genomes]
rs35335466	0.90[ASN][1000 genomes]
rs35474202	0.91[ASN][1000 genomes]
rs35628255	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35952505	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs3736917	1.00[ASN][1000 genomes]
rs4981828	0.80[EUR][1000 genomes]
rs4981841	1.00[ASN][1000 genomes]
rs5024655	0.84[EUR][1000 genomes]
rs61995523	0.84[EUR][1000 genomes]
rs61995529	0.91[ASN][1000 genomes]
rs61995554	0.83[ASN][1000 genomes]
rs61996784	0.83[ASN][1000 genomes]
rs6571403	0.84[EUR][1000 genomes]
rs6571404	0.84[EUR][1000 genomes]
rs727671	1.00[ASN][1000 genomes]
rs7494025	0.84[EUR][1000 genomes]
rs927704	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9788563	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901587	chr14:31501505-31752664	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv2830427	chr14:31639110-32000034	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1050597	chr14:31711248-31904761	Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:31740000-31746200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr14:31740000-31746200	Weak transcription	Esophagus	oesophagus
3	chr14:31743600-31753000	Weak transcription	Osteobl	bone
4	chr14:31744200-31746800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell

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