Variant report

Variant	rs3736917
Chromosome Location	chr14:31795361-31795362
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:31675649..31677388-chr14:31795020..31796590,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000092148	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10147938	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11626839	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap]
rs12886167	0.82[EUR][1000 genomes]
rs12886725	0.82[EUR][1000 genomes]
rs12892246	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12895352	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17577629	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17660791	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.88[YRI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17660955	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2146570	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap]
rs2181420	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2182253	0.80[EUR][1000 genomes]
rs34159200	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34737578	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34777795	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35330064	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35335466	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35474202	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35628255	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35952505	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs41496248	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap]
rs4981832	1.00[ASN][1000 genomes]
rs4981841	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[LWK][hapmap];0.95[TSI][hapmap];0.85[YRI][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61994183	0.82[EUR][1000 genomes]
rs61995529	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61995554	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61996784	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs727671	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs927704	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830427	chr14:31639110-32000034	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1050597	chr14:31711248-31904761	Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv901589	chr14:31768231-31944723	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3736917	RP11-176H8.1	cis	Muscle Skeletal	GTEx

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:31762800-31811800	Weak transcription	Fetal Heart	heart
2	chr14:31768000-31798600	Weak transcription	Brain Germinal Matrix	brain
3	chr14:31768000-31805800	Weak transcription	NHEK	skin
4	chr14:31768200-31799200	Weak transcription	Colonic Mucosa	Colon
5	chr14:31768400-31798600	Weak transcription	Fetal Brain Female	brain
6	chr14:31769800-31798600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr14:31770000-31798200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr14:31770000-31812600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr14:31770400-31802800	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr14:31771000-31888800	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr14:31771600-31798600	Weak transcription	A549	lung
12	chr14:31772400-31825200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr14:31773400-31798200	Weak transcription	Right Ventricle	heart
14	chr14:31774400-31798600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr14:31774400-31800400	Weak transcription	Brain Angular Gyrus	brain
16	chr14:31774600-31811200	Weak transcription	HUVEC	blood vessel
17	chr14:31777200-31795400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr14:31777200-31799400	Weak transcription	Primary T cells from cord blood	blood
19	chr14:31780600-31795800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr14:31782200-31813000	Weak transcription	Rectal Smooth Muscle	rectum
21	chr14:31782200-31814000	Weak transcription	Fetal Kidney	kidney
22	chr14:31782200-31875200	Weak transcription	Gastric	stomach
23	chr14:31782400-31798800	Weak transcription	Spleen	Spleen
24	chr14:31782400-31799200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr14:31782400-31799200	Weak transcription	Brain Cingulate Gyrus	brain
26	chr14:31782400-31827000	Weak transcription	Aorta	Aorta
27	chr14:31782600-31798600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr14:31782600-31798800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr14:31782600-31798800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr14:31784600-31798600	Weak transcription	Brain Substantia Nigra	brain
31	chr14:31785000-31798000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr14:31785200-31798000	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr14:31785200-31798200	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr14:31785200-31799200	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr14:31785400-31798000	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr14:31785600-31798600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr14:31786200-31798600	Weak transcription	Esophagus	oesophagus
38	chr14:31786200-31799400	Weak transcription	Pancreas	Pancrea
39	chr14:31787000-31799200	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr14:31787200-31809200	Weak transcription	NHLF	lung
41	chr14:31787400-31799200	Weak transcription	Primary T helper cells fromperipheralblood	blood
42	chr14:31787600-31798600	Weak transcription	Duodenum Mucosa	Duodenum
43	chr14:31787800-31798200	Weak transcription	Brain Anterior Caudate	brain
44	chr14:31788200-31796400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr14:31788200-31798000	Weak transcription	Fetal Intestine Large	intestine
46	chr14:31788200-31798600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr14:31788200-31798600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr14:31789800-31798000	Weak transcription	Primary B cells from cord blood	blood
49	chr14:31789800-31798600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr14:31789800-31798600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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