Variant report

Variant	rs12895352
Chromosome Location	chr14:31886265-31886266
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:31880032..31886531-chr14:31888185..31891239,11	MCF-7	breast:
2	chr14:31881736..31883934-chr14:31886217..31888146,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000129493	Chromatin interaction
ENSG00000250365	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10147938	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12882949	0.83[EUR][1000 genomes]
rs12886167	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12886725	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12892246	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17577629	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17660791	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17660955	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2181420	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2182252	0.87[EUR][1000 genomes]
rs2182253	0.88[EUR][1000 genomes]
rs34159200	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34737578	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34777795	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35330064	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35335466	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35474202	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35628255	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35952505	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3736917	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4981832	0.90[ASN][1000 genomes]
rs4981841	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61994183	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61995529	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61995554	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61996784	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs727671	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs927704	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830427	chr14:31639110-32000034	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1050597	chr14:31711248-31904761	Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv901589	chr14:31768231-31944723	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv1042776	chr14:31844026-32003929	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv542019	chr14:31844026-32003929	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
6	nsv931935	chr14:31871658-32117666	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
7	nsv1050774	chr14:31879687-32102906	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:31771000-31888800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr14:31816000-31888800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr14:31847800-31887400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr14:31855000-31888400	Weak transcription	Primary T cells from cord blood	blood
5	chr14:31861600-31888400	Weak transcription	Psoas Muscle	Psoas
6	chr14:31863000-31889000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr14:31864600-31888400	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr14:31865800-31888600	Weak transcription	Fetal Muscle Trunk	muscle
9	chr14:31867000-31886800	Weak transcription	Esophagus	oesophagus
10	chr14:31868200-31887400	Weak transcription	Fetal Intestine Large	intestine
11	chr14:31870600-31888200	Weak transcription	Fetal Stomach	stomach
12	chr14:31870800-31888800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr14:31871000-31888400	Weak transcription	Fetal Muscle Leg	muscle
14	chr14:31871000-31888800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr14:31871200-31888800	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr14:31871600-31887400	Weak transcription	Liver	Liver
17	chr14:31871600-31888400	Weak transcription	NH-A	brain
18	chr14:31871800-31887600	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr14:31872200-31888200	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr14:31872800-31887000	Weak transcription	Left Ventricle	heart
21	chr14:31874600-31887000	Weak transcription	Ovary	ovary
22	chr14:31875800-31887600	Weak transcription	Duodenum Mucosa	Duodenum
23	chr14:31875800-31888200	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr14:31875800-31888200	Weak transcription	K562	blood
25	chr14:31876000-31889000	Weak transcription	Gastric	stomach
26	chr14:31879000-31888600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr14:31880000-31888600	Weak transcription	Primary B cells from peripheral blood	blood
28	chr14:31880200-31887600	Weak transcription	Primary B cells from cord blood	blood
29	chr14:31880800-31887600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr14:31880800-31888400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr14:31881000-31887000	Weak transcription	Adipose Nuclei	Adipose
32	chr14:31881000-31887200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr14:31881000-31887200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr14:31881000-31887400	Weak transcription	Colon Smooth Muscle	Colon
35	chr14:31881000-31887600	Weak transcription	Rectal Smooth Muscle	rectum
36	chr14:31881000-31888200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr14:31881000-31888200	Weak transcription	Brain Cingulate Gyrus	brain
38	chr14:31881000-31888400	Weak transcription	Primary hematopoietic stem cells	blood
39	chr14:31883200-31888600	Weak transcription	Aorta	Aorta
40	chr14:31883400-31887600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr14:31883800-31887600	Weak transcription	GM12878-XiMat	blood
42	chr14:31884000-31887000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr14:31884000-31887400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr14:31884000-31887400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr14:31884000-31887400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr14:31884000-31887400	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr14:31884000-31887400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr14:31884000-31887600	Weak transcription	Monocytes-CD14+_RO01746	blood
49	chr14:31884000-31887600	Weak transcription	Osteobl	bone
50	chr14:31884000-31888400	Weak transcription	Brain Angular Gyrus	brain

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