Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:31750344..31752843-chr14:31756445..31759313,2	K562	blood:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10147938	0.82[EUR][1000 genomes]
rs12892246	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12895352	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17577629	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17660791	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17660955	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2181420	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34159200	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34737578	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34777795	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35330064	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35335466	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35474202	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35952505	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3736917	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4981832	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4981841	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61995529	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61995554	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61996784	0.83[ASN][1000 genomes]
rs727671	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs927704	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901587	chr14:31501505-31752664	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv2830427	chr14:31639110-32000034	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1050597	chr14:31711248-31904761	Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:31743600-31753000	Weak transcription	Osteobl	bone
2	chr14:31746600-31755400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr14:31748400-31751400	Enhancers	HepG2	liver
4	chr14:31749400-31789000	Weak transcription	Psoas Muscle	Psoas
5	chr14:31750600-31753000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

Quick Search: