Variant report

Variant	rs11626839
Chromosome Location	chr14:31710264-31710265
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:31708924..31710880-chr14:31720802..31723577,2	K562	blood:
2	chr14:31705909..31710425-chr14:31710546..31713834,4	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10132373	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10135213	0.96[EUR][1000 genomes]
rs10138200	0.96[EUR][1000 genomes]
rs10148827	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10151563	0.96[EUR][1000 genomes]
rs1041088	0.96[CEU][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs10872849	0.85[EUR][1000 genomes]
rs11156660	0.86[EUR][1000 genomes]
rs11156661	0.86[EUR][1000 genomes]
rs12184973	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12434266	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12588620	0.85[EUR][1000 genomes]
rs12889162	0.96[EUR][1000 genomes]
rs12892246	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.93[MEX][hapmap]
rs17577629	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17660791	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap]
rs17660955	1.00[CHB][hapmap]
rs2146570	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.91[YRI][hapmap]
rs2378848	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs3736917	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap]
rs4011661	0.80[EUR][1000 genomes]
rs41496248	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.93[MEX][hapmap]
rs4981828	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4981832	0.81[EUR][1000 genomes]
rs4981841	1.00[CHB][hapmap];0.80[TSI][hapmap]
rs5024655	0.96[EUR][1000 genomes]
rs61995523	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6571402	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6571403	0.96[EUR][1000 genomes]
rs6571404	0.96[EUR][1000 genomes]
rs7146274	0.86[EUR][1000 genomes]
rs7147686	0.88[CEU][hapmap];0.81[TSI][hapmap];0.85[EUR][1000 genomes]
rs7156178	0.86[EUR][1000 genomes]
rs7160407	1.00[ASN][1000 genomes]
rs7494025	0.96[EUR][1000 genomes]
rs8022573	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9788563	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901587	chr14:31501505-31752664	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1050054	chr14:31501703-31733642	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	esv2830427	chr14:31639110-32000034	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:31707800-31710600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr14:31707800-31710600	Weak transcription	Colon Smooth Muscle	Colon
3	chr14:31707800-31710600	Weak transcription	Stomach Mucosa	stomach
4	chr14:31707800-31711000	Weak transcription	Esophagus	oesophagus
5	chr14:31707800-31711000	Weak transcription	Spleen	Spleen
6	chr14:31707800-31712800	Weak transcription	Lung	lung
7	chr14:31707800-31713400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr14:31707800-31730800	Weak transcription	Pancreas	Pancrea
9	chr14:31708800-31710600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr14:31709000-31710800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr14:31709000-31710800	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr14:31709000-31713800	Enhancers	K562	blood
13	chr14:31709200-31710800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr14:31709400-31710800	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr14:31709400-31710800	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr14:31709400-31711000	Weak transcription	Small Intestine	intestine
17	chr14:31710000-31710400	Weak transcription	GM12878-XiMat	blood
18	chr14:31710200-31711200	Enhancers	Fetal Heart	heart
19	chr14:31710200-31712000	Enhancers	HepG2	liver

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