Variant report

Variant	rs10157052
Chromosome Location	chr1:179196996-179196997
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:179189295..179193775-chr1:179196197..179201101,5	K562	blood:
2	chr1:179188852..179191101-chr1:179195980..179198204,2	K562	blood:
3	chr1:179059594..179062253-chr1:179196494..179198412,2	MCF-7	breast:
4	chr1:179181952..179183733-chr1:179196308..179198150,2	K562	blood:
5	chr1:179187242..179191261-chr1:179196503..179201085,5	MCF-7	breast:
6	chr1:179194698..179198189-chr1:179199454..179203395,4	K562	blood:

Variant related genes	Relation type
ENSG00000225711	Chromatin interaction

rs_ID	r²[population]
rs10157487	1.00[AMR][1000 genomes]
rs10159048	1.00[AMR][1000 genomes]
rs28459842	0.83[AFR][1000 genomes]
rs28913571	1.00[AMR][1000 genomes]
rs28913879	1.00[AMR][1000 genomes]
rs55877399	1.00[AMR][1000 genomes]
rs55895054	1.00[AMR][1000 genomes]
rs55955319	0.83[AFR][1000 genomes]
rs56007923	1.00[AMR][1000 genomes]
rs56265148	1.00[AMR][1000 genomes]
rs56948577	1.00[AMR][1000 genomes]
rs57443960	1.00[AMR][1000 genomes]
rs58082966	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58148372	1.00[AMR][1000 genomes]
rs58947223	1.00[AMR][1000 genomes]
rs59835487	1.00[AMR][1000 genomes]
rs60428208	1.00[AMR][1000 genomes]
rs60642070	1.00[AMR][1000 genomes]
rs61171624	1.00[AMR][1000 genomes]
rs6681864	1.00[AMR][1000 genomes]
rs74129733	1.00[AMR][1000 genomes]
rs74129741	1.00[AMR][1000 genomes]
rs74131923	1.00[AMR][1000 genomes]
rs74131925	1.00[AMR][1000 genomes]
rs9650996	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9728409	1.00[AMR][1000 genomes]

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179157400-179197400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr1:179157400-179197600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:179169000-179197400	Weak transcription	NHEK	skin
4	chr1:179170200-179197200	Weak transcription	Fetal Intestine Large	intestine
5	chr1:179176200-179197600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr1:179176400-179197000	Weak transcription	Fetal Brain Male	brain
7	chr1:179176400-179197400	Weak transcription	Fetal Lung	lung
8	chr1:179176400-179197600	Weak transcription	Left Ventricle	heart
9	chr1:179177000-179197600	Weak transcription	HSMMtube	muscle
10	chr1:179177400-179197200	Weak transcription	Brain Germinal Matrix	brain
11	chr1:179178000-179197600	Weak transcription	Gastric	stomach
12	chr1:179178400-179197600	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr1:179178600-179197600	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr1:179178600-179197600	Weak transcription	NH-A	brain
15	chr1:179178800-179197400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr1:179179200-179197400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr1:179179800-179197200	Weak transcription	Thymus	Thymus
18	chr1:179180200-179197600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr1:179180800-179197200	Weak transcription	Stomach Smooth Muscle	stomach
20	chr1:179181600-179197600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr1:179184400-179197600	Weak transcription	Fetal Thymus	thymus
22	chr1:179184800-179197600	Weak transcription	HMEC	breast
23	chr1:179185400-179197400	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr1:179185600-179197600	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr1:179185800-179197600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr1:179186600-179197600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr1:179187400-179197400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr1:179187600-179197400	Weak transcription	Osteobl	bone
29	chr1:179187600-179197600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr1:179187600-179197600	Weak transcription	HSMM	muscle
31	chr1:179187800-179197200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr1:179187800-179197600	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr1:179187800-179197600	Weak transcription	HUVEC	blood vessel
34	chr1:179188000-179197200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr1:179188000-179197200	Weak transcription	Spleen	Spleen
36	chr1:179188000-179197400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr1:179188000-179197400	Weak transcription	Adipose Nuclei	Adipose
38	chr1:179188000-179197600	Weak transcription	Brain Anterior Caudate	brain
39	chr1:179188000-179197600	Weak transcription	Right Ventricle	heart
40	chr1:179188000-179197600	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr1:179188000-179197600	Weak transcription	NHDF-Ad	bronchial
42	chr1:179188200-179197400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr1:179188200-179197600	Weak transcription	Primary B cells from peripheral blood	blood
44	chr1:179188200-179197600	Weak transcription	NHLF	lung
45	chr1:179188400-179197600	Weak transcription	Primary monocytes fromperipheralblood	blood
46	chr1:179188400-179197600	Weak transcription	Lung	lung
47	chr1:179188400-179197600	Weak transcription	Psoas Muscle	Psoas
48	chr1:179188600-179197600	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr1:179188600-179197600	Weak transcription	Primary hematopoietic stem cells	blood
50	chr1:179190400-179197200	Weak transcription	Primary T cells fromperipheralblood	blood

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