The 2.0 version of rSNPBase

Variant report

Variant rs61171624
Chromosome Location chr1:179052934-179052935
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:125 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:179050400-179053000 Active TSS H9 Cell Line embryonic stem cell
2 chr1:179051000-179053000 Active TSS GM12878-XiMat blood
3 chr1:179051000-179053000 Active TSS HSMMtube muscle
4 chr1:179051800-179053000 Flanking Active TSS Primary hematopoietic stem cells short term culture blood
5 chr1:179051800-179053000 Flanking Active TSS Primary T helper cells PMA-I stimulated --
6 chr1:179052000-179053000 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
7 chr1:179052000-179053400 Flanking Active TSS Duodenum Mucosa Duodenum
8 chr1:179052200-179053000 Enhancers Primary Natural Killer cells fromperipheralblood blood
9 chr1:179052200-179053200 Enhancers Spleen Spleen
10 chr1:179052200-179053400 Enhancers Stomach Mucosa stomach
11 chr1:179052200-179062200 Weak transcription Small Intestine intestine
12 chr1:179052400-179053000 Bivalent Enhancer H1 Cell Line embryonic stem cell
13 chr1:179052400-179053000 Weak transcription HUES48 Cell Line embryonic stem cell
14 chr1:179052400-179053000 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
15 chr1:179052400-179053000 Enhancers ES-UCSF4 Cell Line embryonic stem cell
16 chr1:179052400-179053000 Enhancers Primary monocytes fromperipheralblood blood
17 chr1:179052400-179053000 Active TSS Primary T regulatory cells fromperipheralblood blood
18 chr1:179052400-179053000 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
19 chr1:179052400-179053000 Enhancers Fetal Thymus thymus
20 chr1:179052400-179053000 Active TSS Rectal Mucosa Donor 29 rectum
21 chr1:179052400-179053200 Enhancers iPS-15b Cell Line embryonic stem cell
22 chr1:179052400-179053200 Enhancers Primary T helper naive cells fromperipheralblood blood
23 chr1:179052400-179053200 Enhancers Primary T killer naive cells fromperipheralblood blood
24 chr1:179052400-179053200 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
25 chr1:179052400-179053200 Enhancers Brain Hippocampus Middle brain
26 chr1:179052400-179053200 Enhancers Fetal Intestine Large intestine
27 chr1:179052400-179053200 Enhancers Fetal Intestine Small intestine
28 chr1:179052400-179053200 Enhancers Pancreas Pancrea
29 chr1:179052400-179053200 Enhancers Skeletal Muscle Male skeletal muscle
30 chr1:179052400-179053400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
31 chr1:179052400-179053400 Enhancers Primary T helper naive cells from peripheral blood blood
32 chr1:179052400-179053800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
33 chr1:179052400-179053800 Weak transcription Brain Anterior Caudate brain
34 chr1:179052400-179053800 Weak transcription Colonic Mucosa Colon
35 chr1:179052400-179053800 Weak transcription Gastric stomach
36 chr1:179052400-179053800 Weak transcription Lung lung
37 chr1:179052400-179053800 Weak transcription Ovary ovary
38 chr1:179052400-179053800 Weak transcription Sigmoid Colon Sigmoid Colon
39 chr1:179052400-179054400 Weak transcription Right Ventricle heart
40 chr1:179052400-179054600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
41 chr1:179052400-179054800 Weak transcription Aorta Aorta
42 chr1:179052400-179054800 Weak transcription Brain Germinal Matrix brain
43 chr1:179052400-179054800 Weak transcription Brain Substantia Nigra brain
44 chr1:179052400-179054800 Weak transcription Left Ventricle heart
45 chr1:179052400-179054800 Weak transcription Placenta Amnion Placenta Amnion
46 chr1:179052400-179054800 Weak transcription Rectal Smooth Muscle rectum
47 chr1:179052400-179056000 Weak transcription Primary hematopoietic stem cells blood
48 chr1:179052400-179056000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
49 chr1:179052400-179056200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
50 chr1:179052400-179056400 Weak transcription ES-WA7 Cell Line embryonic stem cell

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Last update: Aug 31, 2015