Variant report

Variant	rs55895054
Chromosome Location	chr1:178999957-178999958
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:178998854..179000742-chr1:179002565..179004439,2	MCF-7	breast:
2	chr1:178969379..178972157-chr1:178998248..179000443,2	MCF-7	breast:
3	chr1:178925209..178926761-chr1:178997159..179000128,2	K562	blood:
4	chr1:178980100..178983059-chr1:178999156..179001335,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10157052	1.00[AMR][1000 genomes]
rs10157487	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10159048	1.00[AMR][1000 genomes]
rs28913571	1.00[AMR][1000 genomes]
rs28913879	1.00[AMR][1000 genomes]
rs55877399	1.00[AMR][1000 genomes]
rs56007923	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56265148	1.00[AMR][1000 genomes]
rs56685652	1.00[AMR][1000 genomes]
rs56948577	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57443960	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58082966	1.00[AMR][1000 genomes]
rs58148372	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58947223	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59835487	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60428208	1.00[AMR][1000 genomes]
rs60642070	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61171624	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6681864	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74129722	1.00[AMR][1000 genomes]
rs74129730	1.00[AMR][1000 genomes]
rs74129733	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74129741	1.00[AMR][1000 genomes]
rs74131923	1.00[AMR][1000 genomes]
rs74131925	1.00[AMR][1000 genomes]
rs9650996	1.00[AMR][1000 genomes]
rs9728409	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:178996200-179001200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr1:178996200-179003200	Weak transcription	Gastric	stomach
3	chr1:178996200-179009200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:178996400-179000800	Enhancers	Primary T cells from cord blood	blood
5	chr1:178996400-179001400	Weak transcription	Aorta	Aorta
6	chr1:178996400-179001800	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr1:178996400-179003200	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr1:178996400-179003200	Weak transcription	Esophagus	oesophagus
9	chr1:178996400-179006200	Weak transcription	Fetal Stomach	stomach
10	chr1:178996400-179011200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr1:178996600-179001000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr1:178996600-179004000	Weak transcription	Fetal Kidney	kidney
13	chr1:178996800-179000000	Enhancers	Stomach Mucosa	stomach
14	chr1:178996800-179000600	Enhancers	Liver	Liver
15	chr1:178996800-179000600	Weak transcription	Fetal Lung	lung
16	chr1:178996800-179000600	Weak transcription	HSMMtube	muscle
17	chr1:178996800-179000800	Weak transcription	Fetal Brain Female	brain
18	chr1:178996800-179001000	Weak transcription	NH-A	brain
19	chr1:178996800-179001400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr1:178996800-179001400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr1:178996800-179001800	Weak transcription	Fetal Muscle Leg	muscle
22	chr1:178996800-179002600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr1:178996800-179003000	Weak transcription	Right Ventricle	heart
24	chr1:178996800-179003200	Weak transcription	Thymus	Thymus
25	chr1:178997000-179000000	Weak transcription	NHDF-Ad	bronchial
26	chr1:178997000-179000800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr1:178997000-179000800	Weak transcription	HSMM	muscle
28	chr1:178997000-179000800	Weak transcription	Osteobl	bone
29	chr1:178997000-179001000	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr1:178997000-179001000	Weak transcription	HMEC	breast
31	chr1:178997000-179001400	Weak transcription	HUVEC	blood vessel
32	chr1:178997000-179003200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr1:178997000-179003200	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr1:178997000-179005800	Weak transcription	Brain Substantia Nigra	brain
35	chr1:178997200-179000000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr1:178997200-179000200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr1:178997200-179003200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr1:178997400-179000200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr1:178997600-179002200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr1:178997600-179002200	Flanking Active TSS	GM12878-XiMat	blood
41	chr1:178997800-179000000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr1:178997800-179000000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr1:178997800-179000600	Flanking Active TSS	K562	blood
44	chr1:178997800-179001400	Enhancers	Primary T helper cells PMA-I stimulated	--
45	chr1:178997800-179001800	Enhancers	Duodenum Mucosa	Duodenum
46	chr1:178997800-179004800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr1:178998200-179000000	Enhancers	Fetal Intestine Small	intestine
48	chr1:178998200-179000200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr1:178998200-179000800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
50	chr1:178998200-179001600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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