Variant report

Variant	rs10159513
Chromosome Location	chr10:89865548-89865549
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10159903	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10160109	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10788581	0.81[ASN][1000 genomes]
rs10788583	0.90[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10887779	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10887780	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10887783	0.90[CEU][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11202655	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11202656	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17108932	0.95[CEU][hapmap];0.91[CHB][hapmap];0.89[JPT][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831940	chr10:89811247-89989199	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89861600-89868000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr10:89863200-89869000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr10:89863800-89869200	Enhancers	Primary B cells from peripheral blood	blood
4	chr10:89864200-89865800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr10:89864600-89866000	Enhancers	Primary B cells from cord blood	blood
6	chr10:89864600-89875400	Weak transcription	Aorta	Aorta
7	chr10:89864800-89865800	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr10:89865000-89865600	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr10:89865000-89865800	Enhancers	GM12878-XiMat	blood
10	chr10:89865000-89869000	Enhancers	Primary hematopoietic stem cells short term culture	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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