Variant report

Variant	rs10788583
Chromosome Location	chr10:89868002-89868003
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:80888030..80888626-chr10:89867901..89868420,2	MCF-7	breast:
2	chr10:89620141..89628673-chr10:89867993..89880509,31	MCF-7	breast:

Variant related genes	Relation type
ENSG00000227268	Chromatin interaction
ENSG00000171862	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10159513	0.90[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10159903	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10160109	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10788581	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10887778	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10887779	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10887780	0.90[CEU][hapmap];0.86[CHB][hapmap];0.88[JPT][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10887783	0.90[CEU][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11202655	0.94[CEU][hapmap];0.86[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11202656	0.84[CEU][hapmap];0.91[CHB][hapmap];0.88[JPT][hapmap];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17108932	0.85[CEU][hapmap];0.86[CHB][hapmap];0.83[JPT][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831940	chr10:89811247-89989199	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89863200-89869000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr10:89863800-89869200	Enhancers	Primary B cells from peripheral blood	blood
3	chr10:89864600-89875400	Weak transcription	Aorta	Aorta
4	chr10:89865000-89869000	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr10:89865600-89868600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr10:89865800-89868600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
7	chr10:89865800-89868800	Enhancers	Primary hematopoietic stem cells	blood
8	chr10:89865800-89870200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr10:89866400-89868400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr10:89866400-89868800	Enhancers	Fetal Thymus	thymus
11	chr10:89866600-89868600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr10:89866800-89869000	Enhancers	Primary B cells from cord blood	blood
13	chr10:89867400-89868200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
14	chr10:89867400-89869400	Enhancers	Dnd41	blood
15	chr10:89867400-89869400	Flanking Active TSS	GM12878-XiMat	blood
16	chr10:89867600-89868200	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr10:89867600-89868400	Enhancers	Primary T cells from cord blood	blood
18	chr10:89867600-89868400	Enhancers	Primary T cells fromperipheralblood	blood
19	chr10:89867600-89868400	Enhancers	Primary T helper cells fromperipheralblood	blood
20	chr10:89867600-89868400	Enhancers	Left Ventricle	heart
21	chr10:89867600-89868400	Enhancers	Psoas Muscle	Psoas
22	chr10:89867600-89868400	Enhancers	Thymus	Thymus
23	chr10:89867800-89868200	Enhancers	Primary T helper naive cells from peripheral blood	blood
24	chr10:89867800-89868200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
25	chr10:89867800-89868200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
26	chr10:89867800-89868400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr10:89867800-89868400	Enhancers	Primary T helper cells PMA-I stimulated	--
28	chr10:89867800-89868400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr10:89867800-89868400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
30	chr10:89867800-89868400	Enhancers	HSMM	muscle
31	chr10:89867800-89873200	Weak transcription	Spleen	Spleen
32	chr10:89867800-89873800	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr10:89868000-89868400	Enhancers	H1 Cell Line	embryonic stem cell
34	chr10:89868000-89868400	Enhancers	H9 Cell Line	embryonic stem cell
35	chr10:89868000-89868400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr10:89868000-89872800	Weak transcription	Adipose Nuclei	Adipose
37	chr10:89868000-89873800	Weak transcription	Fetal Muscle Leg	muscle

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