Variant report

Variant	rs10160109
Chromosome Location	chr10:89865699-89865700
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10159513	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10159903	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10788581	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10788583	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10887778	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs10887779	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10887780	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10887783	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11202655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11202656	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17108932	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831940	chr10:89811247-89989199	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89861600-89868000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr10:89863200-89869000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr10:89863800-89869200	Enhancers	Primary B cells from peripheral blood	blood
4	chr10:89864200-89865800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr10:89864600-89866000	Enhancers	Primary B cells from cord blood	blood
6	chr10:89864600-89875400	Weak transcription	Aorta	Aorta
7	chr10:89864800-89865800	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr10:89865000-89865800	Enhancers	GM12878-XiMat	blood
9	chr10:89865000-89869000	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr10:89865600-89866800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
11	chr10:89865600-89868600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links