Variant report

Variant	rs11202656
Chromosome Location	chr10:89866649-89866650
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10159513	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10159903	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10160109	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10788581	0.86[AMR][1000 genomes]
rs10788582	0.84[GIH][hapmap]
rs10788583	0.84[CEU][hapmap];0.91[CHB][hapmap];0.88[JPT][hapmap];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10887778	0.86[AMR][1000 genomes]
rs10887779	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10887780	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10887783	0.85[CEU][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11202655	0.83[ASW][hapmap];0.89[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.91[TSI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17108932	1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831940	chr10:89811247-89989199	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89861600-89868000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr10:89863200-89869000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr10:89863800-89869200	Enhancers	Primary B cells from peripheral blood	blood
4	chr10:89864600-89875400	Weak transcription	Aorta	Aorta
5	chr10:89865000-89869000	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr10:89865600-89866800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
7	chr10:89865600-89868600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr10:89865800-89868600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
9	chr10:89865800-89868800	Enhancers	Primary hematopoietic stem cells	blood
10	chr10:89865800-89870200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr10:89866000-89866800	Flanking Active TSS	Primary B cells from cord blood	blood
12	chr10:89866200-89867600	Weak transcription	Thymus	Thymus
13	chr10:89866400-89867400	Enhancers	GM12878-XiMat	blood
14	chr10:89866400-89867600	Weak transcription	Brain Hippocampus Middle	brain
15	chr10:89866400-89867600	Weak transcription	Spleen	Spleen
16	chr10:89866400-89868400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr10:89866400-89868800	Enhancers	Fetal Thymus	thymus
18	chr10:89866600-89868600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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