Variant report

Variant	rs10160327
Chromosome Location	chr11:45376482-45376483
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ELF1	chr11:45376477-45377365	MCF-7	breast:	n/a	chr11:45377057-45377068 chr11:45376993-45377002 chr11:45376992-45377003 chr11:45376992-45377001 chr11:45376992-45377003
2	GABPA	chr11:45376351-45377587	MCF-7	breast:	n/a	n/a
3	REST	chr11:45376377-45377817	H1-neurons	neurons:	n/a	chr11:45377454-45377467
4	YY1	chr11:45376358-45377391	H1-hESC	embryonic stem cell:	n/a	chr11:45376957-45376965 chr11:45376958-45376968 chr11:45376951-45376970 chr11:45376946-45376968
5	YY1	chr11:45376481-45377198	NT2-D1	testis:	n/a	chr11:45376957-45376965 chr11:45376958-45376968 chr11:45376951-45376970 chr11:45376946-45376968

Variant related genes	Relation type
ENSG00000254427	TF binding region

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10160497	1.00[AFR][1000 genomes]
rs10160519	1.00[AFR][1000 genomes]
rs10160836	1.00[AFR][1000 genomes]
rs10838454	0.86[AFR][1000 genomes]
rs10838455	0.86[AFR][1000 genomes]
rs11038407	1.00[AFR][1000 genomes]
rs12271093	1.00[AFR][1000 genomes]
rs12271267	1.00[AFR][1000 genomes]
rs12271361	1.00[AFR][1000 genomes]
rs12271364	1.00[AFR][1000 genomes]
rs12277014	1.00[AFR][1000 genomes]
rs12278158	1.00[AFR][1000 genomes]
rs12278979	1.00[AFR][1000 genomes]
rs12280437	0.81[AFR][1000 genomes]
rs12282645	1.00[AFR][1000 genomes]
rs12282717	1.00[AFR][1000 genomes]
rs12282865	1.00[AFR][1000 genomes]
rs12282869	1.00[AFR][1000 genomes]
rs12283673	1.00[AFR][1000 genomes]
rs12283785	1.00[AFR][1000 genomes]
rs12285665	0.86[AFR][1000 genomes]
rs12285949	1.00[AFR][1000 genomes]
rs12287647	1.00[AFR][1000 genomes]
rs12289376	1.00[AFR][1000 genomes]
rs12289623	1.00[AFR][1000 genomes]
rs12292096	1.00[AFR][1000 genomes]
rs12292231	1.00[AFR][1000 genomes]
rs73454104	1.00[AFR][1000 genomes]
rs73454105	1.00[AFR][1000 genomes]
rs73454107	1.00[AFR][1000 genomes]
rs73454109	1.00[AFR][1000 genomes]
rs73454110	1.00[AFR][1000 genomes]
rs73454120	1.00[AFR][1000 genomes]
rs73454122	1.00[AFR][1000 genomes]
rs73454123	1.00[AFR][1000 genomes]
rs73454125	1.00[AFR][1000 genomes]
rs73454127	1.00[AFR][1000 genomes]
rs73454141	0.93[AFR][1000 genomes]
rs73454155	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530619	chr11:45294176-45553928	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45369200-45376600	Weak transcription	Thymus	Thymus
2	chr11:45370000-45376600	Weak transcription	Fetal Stomach	stomach
3	chr11:45373400-45376600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr11:45373800-45376600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr11:45375000-45376800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr11:45375400-45377000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr11:45375800-45376600	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr11:45376000-45376800	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr11:45376200-45376600	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr11:45376200-45376600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr11:45376200-45376600	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr11:45376200-45376800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr11:45376200-45376800	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr11:45376200-45377400	Active TSS	iPS-20b Cell Line	embryonic stem cell
15	chr11:45376200-45377400	Active TSS	Colon Smooth Muscle	Colon
16	chr11:45376400-45376600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:45376400-45376600	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr11:45376400-45376600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr11:45376400-45376600	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr11:45376400-45376600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
21	chr11:45376400-45376600	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr11:45376400-45376600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
23	chr11:45376400-45376600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr11:45376400-45376600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr11:45376400-45376600	Enhancers	Brain Angular Gyrus	brain
26	chr11:45376400-45376600	Flanking Active TSS	Brain Anterior Caudate	brain
27	chr11:45376400-45376600	Enhancers	Brain Substantia Nigra	brain
28	chr11:45376400-45376600	Bivalent Enhancer	Duodenum Mucosa	Duodenum
29	chr11:45376400-45376600	Enhancers	Fetal Brain Male	brain
30	chr11:45376400-45376600	Enhancers	Fetal Brain Female	brain
31	chr11:45376400-45376600	Active TSS	Fetal Heart	heart
32	chr11:45376400-45376600	Active TSS	Monocytes-CD14+_RO01746	blood
33	chr11:45376400-45376800	Enhancers	H1 Cell Line	embryonic stem cell
34	chr11:45376400-45376800	Enhancers	Breast Myoepithelial Primary Cells	Breast
35	chr11:45376400-45376800	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
36	chr11:45376400-45376800	Enhancers	Primary B cells from peripheral blood	blood
37	chr11:45376400-45376800	Enhancers	Primary T cells fromperipheralblood	blood
38	chr11:45376400-45376800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
39	chr11:45376400-45376800	Active TSS	Adipose Nuclei	Adipose
40	chr11:45376400-45376800	Flanking Active TSS	Brain Germinal Matrix	brain
41	chr11:45376400-45377000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr11:45376400-45377200	Active TSS	Primary T helper naive cells fromperipheralblood	blood
43	chr11:45376400-45377200	Active TSS	Primary T helper cells PMA-I stimulated	--
44	chr11:45376400-45377400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr11:45376400-45377400	Active TSS	Stomach Mucosa	stomach
46	chr11:45376400-45377600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
47	chr11:45376400-45377600	Active TSS	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links