Variant report
| Variant | rs12285665 |
|---|---|
| Chromosome Location | chr11:45382520-45382521 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000254427 | Chromatin interaction |
| ENSG00000181830 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:36)
| rs_ID | r2[population] |
|---|---|
| rs10160327 | 0.86[AFR][1000 genomes] |
| rs10160497 | 1.00[YRI][hapmap];0.86[AFR][1000 genomes] |
| rs10160519 | 0.86[AFR][1000 genomes] |
| rs10160836 | 0.86[AFR][1000 genomes] |
| rs11038407 | 0.86[AFR][1000 genomes] |
| rs12271093 | 0.86[AFR][1000 genomes] |
| rs12271267 | 0.86[AFR][1000 genomes] |
| rs12271361 | 0.86[AFR][1000 genomes] |
| rs12271364 | 0.86[AFR][1000 genomes] |
| rs12277014 | 0.86[AFR][1000 genomes] |
| rs12278000 | 0.88[AFR][1000 genomes] |
| rs12278158 | 0.86[AFR][1000 genomes] |
| rs12278979 | 0.86[AFR][1000 genomes] |
| rs12282645 | 1.00[YRI][hapmap];0.86[AFR][1000 genomes] |
| rs12282717 | 0.86[AFR][1000 genomes] |
| rs12282865 | 0.86[AFR][1000 genomes] |
| rs12282869 | 0.86[AFR][1000 genomes] |
| rs12283673 | 0.86[AFR][1000 genomes] |
| rs12283785 | 0.86[AFR][1000 genomes] |
| rs12285949 | 0.86[AFR][1000 genomes] |
| rs12287647 | 0.86[AFR][1000 genomes] |
| rs12289376 | 0.86[AFR][1000 genomes] |
| rs12289623 | 0.86[AFR][1000 genomes] |
| rs12292096 | 0.86[AFR][1000 genomes] |
| rs12292231 | 0.86[AFR][1000 genomes] |
| rs73454104 | 0.86[AFR][1000 genomes] |
| rs73454105 | 0.86[AFR][1000 genomes] |
| rs73454107 | 0.86[AFR][1000 genomes] |
| rs73454109 | 0.86[AFR][1000 genomes] |
| rs73454110 | 0.86[AFR][1000 genomes] |
| rs73454120 | 0.86[AFR][1000 genomes] |
| rs73454122 | 0.86[AFR][1000 genomes] |
| rs73454123 | 0.86[AFR][1000 genomes] |
| rs73454125 | 0.86[AFR][1000 genomes] |
| rs73454127 | 0.86[AFR][1000 genomes] |
| rs73454155 | 1.00[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530619 | chr11:45294176-45553928 | Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:45378000-45387800 | Weak transcription | Lung | lung |
| 2 | chr11:45378200-45387200 | Weak transcription | Brain Anterior Caudate | brain |
| 3 | chr11:45378200-45387800 | Weak transcription | Fetal Brain Male | brain |
