Variant report

Variant	rs12285949
Chromosome Location	chr11:45373872-45373873
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10160327	1.00[AFR][1000 genomes]
rs10160497	1.00[AFR][1000 genomes]
rs10160519	1.00[AFR][1000 genomes]
rs10160836	1.00[AFR][1000 genomes]
rs10838454	0.86[AFR][1000 genomes]
rs10838455	0.86[AFR][1000 genomes]
rs11038407	1.00[AFR][1000 genomes]
rs12271093	1.00[AFR][1000 genomes]
rs12271267	1.00[AFR][1000 genomes]
rs12271361	1.00[AFR][1000 genomes]
rs12271364	1.00[AFR][1000 genomes]
rs12277014	1.00[AFR][1000 genomes]
rs12278158	1.00[AFR][1000 genomes]
rs12278979	1.00[AFR][1000 genomes]
rs12280437	0.81[AFR][1000 genomes]
rs12282645	1.00[AFR][1000 genomes]
rs12282717	1.00[AFR][1000 genomes]
rs12282865	1.00[AFR][1000 genomes]
rs12282869	1.00[AFR][1000 genomes]
rs12283673	1.00[AFR][1000 genomes]
rs12283785	1.00[AFR][1000 genomes]
rs12285665	0.86[AFR][1000 genomes]
rs12287647	1.00[AFR][1000 genomes]
rs12289376	1.00[AFR][1000 genomes]
rs12289623	1.00[AFR][1000 genomes]
rs12292096	1.00[AFR][1000 genomes]
rs12292231	1.00[AFR][1000 genomes]
rs73454104	1.00[AFR][1000 genomes]
rs73454105	1.00[AFR][1000 genomes]
rs73454107	1.00[AFR][1000 genomes]
rs73454109	1.00[AFR][1000 genomes]
rs73454110	1.00[AFR][1000 genomes]
rs73454120	1.00[AFR][1000 genomes]
rs73454122	1.00[AFR][1000 genomes]
rs73454123	1.00[AFR][1000 genomes]
rs73454125	1.00[AFR][1000 genomes]
rs73454127	1.00[AFR][1000 genomes]
rs73454141	0.93[AFR][1000 genomes]
rs73454155	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530619	chr11:45294176-45553928	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45362200-45376400	Weak transcription	Brain Germinal Matrix	brain
2	chr11:45369200-45376600	Weak transcription	Thymus	Thymus
3	chr11:45370000-45376600	Weak transcription	Fetal Stomach	stomach
4	chr11:45371600-45374000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr11:45372000-45374200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr11:45372800-45374000	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr11:45373400-45376400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:45373400-45376600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr11:45373600-45374200	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr11:45373600-45374200	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr11:45373600-45376200	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr11:45373600-45376400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr11:45373800-45374000	Enhancers	H9 Cell Line	embryonic stem cell
14	chr11:45373800-45374000	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr11:45373800-45375400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr11:45373800-45376200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr11:45373800-45376200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr11:45373800-45376400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr11:45373800-45376600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links