Variant report

Variant	rs12283673
Chromosome Location	chr11:45377962-45377963
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PRDM11-3	chr11:45377947-45378165	XLOC_009120
2	lnc-PRDM11-3	chr11:45377947-45378195	XLOC_009120
3	lnc-PRDM11-3	chr11:45377947-45378689	XLOC_009120
4	lnc-PRDM11-3	chr11:45377430-45378199	ENSG00000254427
5	lnc-PRDM11-3	chr11:45377947-45378204	ENSG00000254427
6	lnc-PRDM11-3	chr11:45377249-45378689	NONHSAT019018

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10160327	1.00[AFR][1000 genomes]
rs10160497	1.00[AFR][1000 genomes]
rs10160519	1.00[AFR][1000 genomes]
rs10160836	1.00[AFR][1000 genomes]
rs10838454	0.86[AFR][1000 genomes]
rs10838455	0.86[AFR][1000 genomes]
rs11038407	1.00[AFR][1000 genomes]
rs12271093	1.00[AFR][1000 genomes]
rs12271267	1.00[AFR][1000 genomes]
rs12271361	1.00[AFR][1000 genomes]
rs12271364	1.00[AFR][1000 genomes]
rs12277014	1.00[AFR][1000 genomes]
rs12278158	1.00[AFR][1000 genomes]
rs12278979	1.00[AFR][1000 genomes]
rs12280437	0.81[AFR][1000 genomes]
rs12282645	1.00[AFR][1000 genomes]
rs12282717	1.00[AFR][1000 genomes]
rs12282865	1.00[AFR][1000 genomes]
rs12282869	1.00[AFR][1000 genomes]
rs12283785	1.00[AFR][1000 genomes]
rs12285665	0.86[AFR][1000 genomes]
rs12285949	1.00[AFR][1000 genomes]
rs12287647	1.00[AFR][1000 genomes]
rs12289376	1.00[AFR][1000 genomes]
rs12289623	1.00[AFR][1000 genomes]
rs12292096	1.00[AFR][1000 genomes]
rs12292231	1.00[AFR][1000 genomes]
rs73454104	1.00[AFR][1000 genomes]
rs73454105	1.00[AFR][1000 genomes]
rs73454107	1.00[AFR][1000 genomes]
rs73454109	1.00[AFR][1000 genomes]
rs73454110	1.00[AFR][1000 genomes]
rs73454120	1.00[AFR][1000 genomes]
rs73454122	1.00[AFR][1000 genomes]
rs73454123	1.00[AFR][1000 genomes]
rs73454125	1.00[AFR][1000 genomes]
rs73454127	1.00[AFR][1000 genomes]
rs73454141	0.93[AFR][1000 genomes]
rs73454155	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530619	chr11:45294176-45553928	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45376600-45378000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
2	chr11:45376800-45378000	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr11:45376800-45378000	Flanking Active TSS	Fetal Thymus	thymus
4	chr11:45377000-45378200	Enhancers	Small Intestine	intestine
5	chr11:45377200-45378000	Flanking Active TSS	Primary T cells from cord blood	blood
6	chr11:45377200-45378000	Flanking Active TSS	Brain Cingulate Gyrus	brain
7	chr11:45377200-45378200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
8	chr11:45377400-45378000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr11:45377400-45378000	Flanking Active TSS	Brain Angular Gyrus	brain
10	chr11:45377400-45378000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
11	chr11:45377400-45378000	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
12	chr11:45377400-45378000	Flanking Active TSS	Colon Smooth Muscle	Colon
13	chr11:45377400-45378000	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
14	chr11:45377400-45378000	Enhancers	Spleen	Spleen
15	chr11:45377400-45378200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:45377400-45378200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr11:45377400-45378200	Flanking Active TSS	Brain Germinal Matrix	brain
18	chr11:45377600-45378000	Enhancers	H1 Cell Line	embryonic stem cell
19	chr11:45377600-45378000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr11:45377600-45378000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
21	chr11:45377600-45378000	Enhancers	Primary B cells from peripheral blood	blood
22	chr11:45377600-45378000	Enhancers	Primary T cells fromperipheralblood	blood
23	chr11:45377600-45378000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
24	chr11:45377600-45378000	Flanking Active TSS	Brain Anterior Caudate	brain
25	chr11:45377600-45378000	Enhancers	Fetal Heart	heart
26	chr11:45377600-45378000	Enhancers	Lung	lung
27	chr11:45377600-45378000	Enhancers	Pancreas	Pancrea
28	chr11:45377600-45378000	Flanking Active TSS	Rectal Smooth Muscle	rectum
29	chr11:45377600-45378000	Flanking Active TSS	Stomach Smooth Muscle	stomach
30	chr11:45377600-45378200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr11:45377600-45378200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
32	chr11:45377600-45378200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
33	chr11:45377600-45378200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
34	chr11:45377600-45378200	Enhancers	Primary T helper cells fromperipheralblood	blood
35	chr11:45377600-45378200	Flanking Active TSS	Fetal Brain Female	brain
36	chr11:45377600-45378200	Enhancers	Fetal Lung	lung
37	chr11:45377600-45378600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
38	chr11:45377600-45380200	Weak transcription	Aorta	Aorta
39	chr11:45377800-45378000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr11:45377800-45378000	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr11:45377800-45378000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
42	chr11:45377800-45378000	Enhancers	Primary T helper naive cells from peripheral blood	blood
43	chr11:45377800-45378000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
44	chr11:45377800-45378000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr11:45377800-45378000	Flanking Active TSS	Brain Hippocampus Middle	brain
46	chr11:45377800-45378000	Bivalent Enhancer	Duodenum Mucosa	Duodenum
47	chr11:45377800-45378000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
48	chr11:45377800-45378000	Enhancers	Fetal Intestine Large	intestine
49	chr11:45377800-45378000	Enhancers	Right Ventricle	heart
50	chr11:45377800-45378000	Enhancers	Thymus	Thymus

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