Variant report

Variant	rs10161781
Chromosome Location	chr13:93889051-93889052
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:93874469..93877049-chr13:93887079..93889596,2	K562	blood:
2	chr13:93888191..93889771-chr13:93891363..93893761,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs28502183	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56768235	1.00[ASN][1000 genomes]
rs57108159	1.00[ASN][1000 genomes]
rs73635728	1.00[ASN][1000 genomes]
rs73635734	1.00[ASN][1000 genomes]
rs9584095	1.00[ASN][1000 genomes]
rs9584097	1.00[ASN][1000 genomes]
rs9589693	1.00[ASN][1000 genomes]
rs9589694	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1053035	chr13:93842576-94229732	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv541880	chr13:93842576-94229732	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93883200-93890000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr13:93883200-93896000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr13:93883200-93896000	Weak transcription	HSMM	muscle
4	chr13:93884400-93889800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr13:93886400-93889800	Weak transcription	Fetal Intestine Large	intestine
6	chr13:93886600-93889800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr13:93886600-93895800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr13:93886600-93895800	Weak transcription	Fetal Stomach	stomach
9	chr13:93886800-93890600	Weak transcription	HepG2	liver
10	chr13:93886800-93895600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr13:93886800-93895600	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr13:93886800-93895600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr13:93887400-93890000	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr13:93888200-93889600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
15	chr13:93888400-93895600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr13:93888600-93891000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr13:93888600-93892400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr13:93888800-93890800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr13:93888800-93890800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr13:93888800-93891200	Weak transcription	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links