Variant report

Variant	rs57108159
Chromosome Location	chr13:93902578-93902579
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:93896826..93900351-chr13:93900549..93903054,4	K562	blood:
2	chr13:93894789..93899611-chr13:93899761..93903867,5	K562	blood:
3	chr13:93901042..93904106-chr13:93907651..93910569,3	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10161781	1.00[ASN][1000 genomes]
rs28502183	1.00[ASN][1000 genomes]
rs56768235	1.00[ASN][1000 genomes]
rs73540335	1.00[AMR][1000 genomes]
rs73630125	1.00[AMR][1000 genomes]
rs73635728	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73635734	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9584095	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9584097	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9589693	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9589694	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1053035	chr13:93842576-94229732	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv541880	chr13:93842576-94229732	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93897000-93904200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:93897000-93910400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr13:93897200-93902800	Weak transcription	Fetal Stomach	stomach
4	chr13:93897200-93923000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr13:93897400-93907000	Weak transcription	Aorta	Aorta
6	chr13:93899800-93903200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr13:93900800-93902600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr13:93900800-93903200	Enhancers	Osteobl	bone
9	chr13:93900800-93903600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr13:93901000-93902800	Enhancers	HSMM	muscle
11	chr13:93901200-93902600	Enhancers	HMEC	breast
12	chr13:93901200-93903400	Weak transcription	Right Atrium	heart
13	chr13:93901400-93902800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr13:93901400-93907200	Weak transcription	Colon Smooth Muscle	Colon
15	chr13:93901400-93923400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr13:93901600-93905600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr13:93901800-93902800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr13:93901800-93904400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr13:93902000-93902800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr13:93902200-93902800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr13:93902200-93904600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr13:93902200-93904600	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr13:93902400-93902600	Active TSS	ES-I3 Cell Line	embryonic stem cell
24	chr13:93902400-93902600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr13:93902400-93902800	Enhancers	Muscle Satellite Cultured Cells	--
26	chr13:93902400-93902800	Enhancers	HepG2	liver
27	chr13:93902400-93903000	Enhancers	NH-A	brain
28	chr13:93902400-93903400	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr13:93902400-93904600	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr13:93902400-93910200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr13:93902400-93913000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr13:93902400-93914200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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