Variant report

Variant	rs9589694
Chromosome Location	chr13:93909298-93909299
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10161781	1.00[ASN][1000 genomes]
rs28502183	1.00[ASN][1000 genomes]
rs56768235	1.00[ASN][1000 genomes]
rs57108159	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73540335	1.00[AMR][1000 genomes]
rs73630125	1.00[AMR][1000 genomes]
rs73635728	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73635734	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9584095	1.00[ASN][1000 genomes]
rs9584097	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9589693	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1053035	chr13:93842576-94229732	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv541880	chr13:93842576-94229732	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93897000-93910400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr13:93897200-93923000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr13:93901400-93923400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:93902400-93910200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr13:93902400-93913000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr13:93902400-93914200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr13:93902800-93912200	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr13:93902800-93912400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr13:93902800-93912800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr13:93903000-93922800	Weak transcription	Fetal Stomach	stomach
11	chr13:93903000-93923000	Weak transcription	Fetal Intestine Small	intestine
12	chr13:93904800-93915000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr13:93905000-93910200	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr13:93905000-93910200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr13:93905200-93910000	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr13:93906400-93910400	Weak transcription	HepG2	liver
17	chr13:93908800-93910600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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