Variant report

Variant	rs28502183
Chromosome Location	chr13:93895343-93895344
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10161781	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56768235	1.00[ASN][1000 genomes]
rs57108159	1.00[ASN][1000 genomes]
rs73635728	1.00[ASN][1000 genomes]
rs73635734	1.00[ASN][1000 genomes]
rs9584095	1.00[ASN][1000 genomes]
rs9584097	1.00[ASN][1000 genomes]
rs9589693	1.00[ASN][1000 genomes]
rs9589694	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1053035	chr13:93842576-94229732	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv541880	chr13:93842576-94229732	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93883200-93896000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr13:93883200-93896000	Weak transcription	HSMM	muscle
3	chr13:93886600-93895800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr13:93886600-93895800	Weak transcription	Fetal Stomach	stomach
5	chr13:93886800-93895600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr13:93886800-93895600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr13:93886800-93895600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr13:93888400-93895600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr13:93891600-93896000	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr13:93891600-93901200	Weak transcription	Fetal Intestine Small	intestine
11	chr13:93892400-93896000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr13:93892800-93896200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr13:93892800-93896200	Weak transcription	Right Atrium	heart
14	chr13:93894400-93896200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr13:93894600-93895800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr13:93894600-93896000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr13:93894800-93895800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr13:93894800-93897000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr13:93895200-93896600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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