Variant report

Variant	rs10164948
Chromosome Location	chr2:37054773-37054774
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37053268..37055932-chr2:37062190..37065035,2	MCF-7	breast:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10166161	0.82[EUR][1000 genomes]
rs10176081	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10176124	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10180003	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10182741	0.91[EUR][1000 genomes]
rs10183626	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10185737	0.91[EUR][1000 genomes]
rs10188370	0.98[ASN][1000 genomes]
rs10189328	0.80[EUR][1000 genomes]
rs10189918	0.91[EUR][1000 genomes]
rs10201963	0.91[EUR][1000 genomes]
rs10202311	0.91[EUR][1000 genomes]
rs1043290	0.80[EUR][1000 genomes]
rs11673811	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11678807	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11680617	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11680663	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11685600	0.91[EUR][1000 genomes]
rs12479195	0.80[EUR][1000 genomes]
rs12624290	0.87[EUR][1000 genomes]
rs13020894	0.87[ASN][1000 genomes]
rs13027958	0.94[ASN][1000 genomes]
rs13388406	0.80[EUR][1000 genomes]
rs13401327	0.87[EUR][1000 genomes]
rs13408941	0.80[EUR][1000 genomes]
rs13413438	0.91[EUR][1000 genomes]
rs13432707	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17020084	0.91[EUR][1000 genomes]
rs1861434	0.80[EUR][1000 genomes]
rs1861436	0.80[EUR][1000 genomes]
rs1981732	0.93[ASN][1000 genomes]
rs2041828	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2160379	0.80[EUR][1000 genomes]
rs2302658	0.84[EUR][1000 genomes]
rs2372812	0.80[EUR][1000 genomes]
rs2540918	0.80[EUR][1000 genomes]
rs2540919	0.80[EUR][1000 genomes]
rs2540936	0.80[EUR][1000 genomes]
rs2691104	0.80[EUR][1000 genomes]
rs2691109	0.80[EUR][1000 genomes]
rs2691110	0.80[EUR][1000 genomes]
rs2691114	0.80[EUR][1000 genomes]
rs2691115	0.80[EUR][1000 genomes]
rs2691116	0.80[EUR][1000 genomes]
rs2691118	0.80[EUR][1000 genomes]
rs2717492	0.80[EUR][1000 genomes]
rs2717494	0.80[EUR][1000 genomes]
rs2717495	0.80[EUR][1000 genomes]
rs2717505	0.80[EUR][1000 genomes]
rs2717510	0.80[EUR][1000 genomes]
rs2717512	0.80[EUR][1000 genomes]
rs2717519	0.80[EUR][1000 genomes]
rs2717522	0.80[EUR][1000 genomes]
rs28718824	0.84[EUR][1000 genomes]
rs28754306	0.84[EUR][1000 genomes]
rs35622893	0.84[EUR][1000 genomes]
rs6759472	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs723673	0.80[EUR][1000 genomes]
rs7562109	0.87[EUR][1000 genomes]
rs7579735	0.84[EUR][1000 genomes]
rs9789527	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004483	chr2:36875235-37356812	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv535644	chr2:36875235-37356812	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv428395	chr2:36990348-37300352	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv2682	chr2:37015550-37060432	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1011014	chr2:37027819-37095895	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv999465	chr2:37029347-37095895	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37051800-37058200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr2:37051800-37061200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr2:37052000-37062400	Weak transcription	H1 Cell Line	embryonic stem cell

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