Variant report

Variant	rs10188370
Chromosome Location	chr2:37054683-37054684
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37053268..37055932-chr2:37062190..37065035,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10164948	0.98[ASN][1000 genomes]
rs10176081	0.96[ASN][1000 genomes]
rs10176124	0.96[ASN][1000 genomes]
rs10180003	0.98[ASN][1000 genomes]
rs10183626	0.96[ASN][1000 genomes]
rs10490659	0.83[EUR][1000 genomes]
rs11124549	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11673811	0.98[ASN][1000 genomes]
rs11676225	0.83[EUR][1000 genomes]
rs11678303	0.83[EUR][1000 genomes]
rs11678807	0.96[ASN][1000 genomes]
rs11680617	0.96[ASN][1000 genomes]
rs11680663	0.96[ASN][1000 genomes]
rs11682966	0.83[EUR][1000 genomes]
rs11686605	0.88[EUR][1000 genomes]
rs11691236	0.88[EUR][1000 genomes]
rs13020894	0.85[ASN][1000 genomes]
rs13027958	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13432707	0.96[ASN][1000 genomes]
rs17020005	0.83[EUR][1000 genomes]
rs17020024	0.83[EUR][1000 genomes]
rs1981732	0.91[ASN][1000 genomes]
rs2041828	0.96[ASN][1000 genomes]
rs2287087	0.83[EUR][1000 genomes]
rs2540939	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2540941	0.83[AMR][1000 genomes]
rs41486347	0.83[EUR][1000 genomes]
rs55993128	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56186144	0.83[EUR][1000 genomes]
rs57671539	0.83[EUR][1000 genomes]
rs57884362	0.83[EUR][1000 genomes]
rs58970461	0.83[EUR][1000 genomes]
rs59854977	0.88[EUR][1000 genomes]
rs6715033	0.83[EUR][1000 genomes]
rs6739553	0.83[EUR][1000 genomes]
rs6756876	0.83[EUR][1000 genomes]
rs6759472	0.96[ASN][1000 genomes]
rs73924952	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004483	chr2:36875235-37356812	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv535644	chr2:36875235-37356812	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv428395	chr2:36990348-37300352	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv2682	chr2:37015550-37060432	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1011014	chr2:37027819-37095895	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv999465	chr2:37029347-37095895	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37051800-37058200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr2:37051800-37061200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr2:37052000-37062400	Weak transcription	H1 Cell Line	embryonic stem cell

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