Variant report

Variant	rs13020894
Chromosome Location	chr2:37059108-37059109
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs1015600	0.84[ASN][1000 genomes]
rs10164948	0.87[ASN][1000 genomes]
rs10176081	0.89[ASN][1000 genomes]
rs10176124	0.89[ASN][1000 genomes]
rs10180003	0.87[ASN][1000 genomes]
rs10182741	0.86[CHB][hapmap]
rs10183626	0.89[ASN][1000 genomes]
rs10188370	0.85[ASN][1000 genomes]
rs10189328	0.86[CHB][hapmap]
rs10201963	0.86[CHB][hapmap]
rs1043290	0.85[ASN][1000 genomes]
rs10490659	0.86[CHB][hapmap];0.86[CHD][hapmap];0.86[GIH][hapmap]
rs10495868	0.86[CHB][hapmap]
rs11124549	0.80[ASN][1000 genomes]
rs11124552	0.86[CHB][hapmap];0.86[CHD][hapmap]
rs11673811	0.87[ASN][1000 genomes]
rs11674211	0.86[CHB][hapmap]
rs11675109	0.86[CHB][hapmap]
rs11676225	0.86[CHB][hapmap];0.86[CHD][hapmap];0.87[GIH][hapmap]
rs11678303	0.86[CHB][hapmap]
rs11678807	0.89[ASN][1000 genomes]
rs11680617	0.89[ASN][1000 genomes]
rs11680663	0.89[ASN][1000 genomes]
rs11682966	0.86[CHB][hapmap];0.86[CHD][hapmap];0.87[GIH][hapmap]
rs11904023	0.86[CHB][hapmap]
rs12479195	0.86[CHB][hapmap]
rs12624290	0.86[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap]
rs13027958	0.89[ASN][1000 genomes]
rs13401327	0.86[CHB][hapmap]
rs13413438	0.86[CHB][hapmap]
rs13432707	0.89[ASN][1000 genomes]
rs17020005	0.86[CHB][hapmap]
rs17020069	0.86[CHB][hapmap]
rs17020072	0.86[CHB][hapmap]
rs17020074	0.86[CHB][hapmap]
rs17020084	0.85[CHB][hapmap]
rs1861433	0.86[CHB][hapmap]
rs1861434	0.82[ASN][1000 genomes]
rs1861436	0.86[CHB][hapmap];0.93[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.82[ASN][1000 genomes]
rs1981732	0.84[ASN][1000 genomes]
rs2041828	0.89[ASN][1000 genomes]
rs2216106	0.86[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.88[TSI][hapmap]
rs2255330	0.80[ASN][1000 genomes]
rs2372812	0.85[ASN][1000 genomes]
rs2540939	0.80[ASN][1000 genomes]
rs2540941	0.80[ASN][1000 genomes]
rs2691104	0.85[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.90[TSI][hapmap]
rs2691109	0.86[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.90[TSI][hapmap]
rs2691110	0.86[CHB][hapmap]
rs2691114	0.86[CHB][hapmap]
rs2691115	0.86[CHB][hapmap]
rs2691116	0.86[CHB][hapmap]
rs2691118	0.85[CHB][hapmap]
rs2717494	0.86[CHB][hapmap]
rs2717501	0.86[CHB][hapmap]
rs2717505	0.86[CHB][hapmap]
rs2717508	0.80[ASN][1000 genomes]
rs2717509	0.86[CHB][hapmap];0.80[ASN][1000 genomes]
rs2717510	0.86[CHB][hapmap];0.93[CHD][hapmap];0.85[ASN][1000 genomes]
rs2717511	0.86[CHB][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2717512	0.86[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.85[ASN][1000 genomes]
rs2717518	0.86[CHB][hapmap]
rs2717522	0.86[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.90[TSI][hapmap]
rs28718824	0.86[CHB][hapmap];0.93[CHD][hapmap];0.82[GIH][hapmap];0.90[TSI][hapmap]
rs2888418	0.90[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs3732070	1.00[JPT][hapmap]
rs3770775	0.86[CHB][hapmap];0.86[CHD][hapmap]
rs3845779	0.86[CHB][hapmap];0.93[CHD][hapmap]
rs41486347	0.86[CHB][hapmap];0.86[CHD][hapmap];0.87[GIH][hapmap]
rs4635515	0.86[CHB][hapmap]
rs4670630	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6759472	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs723673	0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7562109	1.00[GIH][hapmap]
rs7581702	0.86[CHB][hapmap]
rs9789527	0.82[ASN][1000 genomes]
rs9789649	0.80[ASN][1000 genomes]
rs998321	0.86[CHB][hapmap];0.87[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004483	chr2:36875235-37356812	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv535644	chr2:36875235-37356812	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv428395	chr2:36990348-37300352	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv2682	chr2:37015550-37060432	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1011014	chr2:37027819-37095895	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv999465	chr2:37029347-37095895	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37051800-37061200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:37052000-37062400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr2:37058600-37061000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr2:37058600-37061400	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr2:37058800-37060800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr2:37058800-37062200	Weak transcription	HUVEC	blood vessel

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