Variant report

Variant	rs10165921
Chromosome Location	chr2:152587344-152587345
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:152561165..152563453-chr2:152587104..152589381,2	K562	blood:
2	chr2:152585426..152588067-chr2:152592929..152595399,2	K562	blood:
3	chr2:152575075..152576644-chr2:152586756..152588663,2	K562	blood:

Variant related genes	Relation type
ENSG00000183091	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10180065	0.89[EUR][1000 genomes]
rs10185966	0.91[JPT][hapmap]
rs10200512	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11676866	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11682909	0.80[JPT][hapmap]
rs11894672	0.86[JPT][hapmap]
rs11896217	0.85[JPT][hapmap]
rs12472627	1.00[CEU][hapmap];0.85[JPT][hapmap]
rs12618063	0.88[CEU][hapmap]
rs13016166	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1523181	0.86[JPT][hapmap]
rs1916301	1.00[CEU][hapmap];0.86[JPT][hapmap]
rs2030588	0.83[JPT][hapmap]
rs34577613	0.81[EUR][1000 genomes]
rs3768658	0.91[JPT][hapmap]
rs4077121	0.83[CHB][hapmap];0.80[ASN][1000 genomes]
rs4077122	0.83[CHB][hapmap];0.80[ASN][1000 genomes]
rs4300824	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4316939	0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4393745	0.85[JPT][hapmap]
rs4414677	1.00[CEU][hapmap];0.85[JPT][hapmap];0.89[EUR][1000 genomes]
rs4453694	0.95[JPT][hapmap]
rs4510224	0.85[JPT][hapmap]
rs4664066	0.85[JPT][hapmap]
rs4664496	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4664498	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4664499	0.95[JPT][hapmap]
rs4664501	0.82[ASN][1000 genomes]
rs58903550	0.81[EUR][1000 genomes]
rs6433590	0.96[JPT][hapmap]
rs6711382	0.88[CEU][hapmap];0.91[JPT][hapmap];0.82[EUR][1000 genomes]
rs6711914	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6712443	0.87[CEU][hapmap];0.81[JPT][hapmap];0.81[EUR][1000 genomes]
rs6712533	0.88[CEU][hapmap];0.81[JPT][hapmap];0.81[EUR][1000 genomes]
rs6715027	0.89[EUR][1000 genomes]
rs6744121	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6760384	0.83[CHB][hapmap];0.82[ASN][1000 genomes]
rs7424335	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7564630	0.89[EUR][1000 genomes]
rs7583060	0.89[EUR][1000 genomes]
rs7583148	0.89[EUR][1000 genomes]
rs9288006	0.91[JPT][hapmap]
rs9677576	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934136	chr2:152308156-152664443	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1005746	chr2:152361972-153059840	Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv535984	chr2:152361972-153059840	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv933357	chr2:152526786-152591138	Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:152583000-152587400	Transcr. at gene 5' and 3'	Skeletal Muscle Female	skeletal muscle
2	chr2:152584000-152588400	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr2:152584000-152588600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr2:152584000-152591000	Enhancers	Fetal Lung	lung
5	chr2:152584200-152588200	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr2:152584200-152588200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr2:152584200-152588400	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr2:152584600-152588000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr2:152584600-152588400	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr2:152584800-152588200	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr2:152584800-152610400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr2:152585000-152587600	Enhancers	Primary B cells from peripheral blood	blood
13	chr2:152585000-152588000	Enhancers	Primary B cells from cord blood	blood
14	chr2:152585200-152587600	Enhancers	H9 Cell Line	embryonic stem cell
15	chr2:152585400-152587400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr2:152585400-152587600	Enhancers	H1 Cell Line	embryonic stem cell
17	chr2:152585600-152587800	Weak transcription	Stomach Mucosa	stomach
18	chr2:152585800-152587800	Enhancers	HSMMtube	muscle
19	chr2:152586000-152587600	Enhancers	GM12878-XiMat	blood
20	chr2:152586200-152587800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr2:152586400-152587600	Weak transcription	Fetal Muscle Trunk	muscle
22	chr2:152586400-152588600	Weak transcription	Psoas Muscle	Psoas
23	chr2:152586400-152588600	Active TSS	Skeletal Muscle Male	skeletal muscle
24	chr2:152586600-152587400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr2:152586600-152587400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr2:152586800-152587400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr2:152586800-152587400	Enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr2:152586800-152587400	Enhancers	Placenta Amnion	Placenta Amnion
29	chr2:152586800-152588200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr2:152587000-152587800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr2:152587000-152596000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr2:152587200-152587800	Transcr. at gene 5' and 3'	Fetal Muscle Leg	muscle
33	chr2:152587200-152588200	Enhancers	HSMM	muscle

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