Variant report

Variant	rs10180065
Chromosome Location	chr2:152619007-152619008
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:152614524..152619932-chr2:152620577..152626819,11	K562	blood:
2	chr2:152616288..152619244-chr2:152629461..152632128,2	K562	blood:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10165921	1.00[CEU][hapmap];0.85[JPT][hapmap];0.89[EUR][1000 genomes]
rs10171724	0.87[ASN][1000 genomes]
rs10184063	0.92[ASN][1000 genomes]
rs10185966	0.84[JPT][hapmap];0.85[ASN][1000 genomes]
rs10198530	0.88[ASN][1000 genomes]
rs10198531	0.90[ASN][1000 genomes]
rs10200512	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10754989	0.90[ASN][1000 genomes]
rs11676866	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11682909	0.90[CHB][hapmap];0.95[JPT][hapmap];0.86[MEX][hapmap];0.92[ASN][1000 genomes]
rs11894672	1.00[CHB][hapmap];0.98[CHD][hapmap];0.91[JPT][hapmap];0.88[MEX][hapmap];0.89[ASN][1000 genomes]
rs11896217	0.87[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.94[ASN][1000 genomes]
rs12470190	0.90[ASN][1000 genomes]
rs12472627	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12618063	0.88[CEU][hapmap]
rs12693116	0.99[ASN][1000 genomes]
rs13016166	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1523181	0.95[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.88[MEX][hapmap];0.86[ASN][1000 genomes]
rs1916301	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1916302	0.92[ASN][1000 genomes]
rs2030588	1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs2293221	0.92[ASN][1000 genomes]
rs3768658	1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];0.87[ASN][1000 genomes]
rs3922996	0.98[ASN][1000 genomes]
rs3922997	0.97[ASN][1000 genomes]
rs4233654	0.94[ASN][1000 genomes]
rs4266011	0.82[ASN][1000 genomes]
rs4300824	1.00[CEU][hapmap];0.85[JPT][hapmap];0.92[TSI][hapmap];0.89[EUR][1000 genomes]
rs4306714	0.99[ASN][1000 genomes]
rs4316939	0.88[CEU][hapmap];0.85[JPT][hapmap]
rs4393745	0.87[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.92[ASN][1000 genomes]
rs4414677	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4450595	0.99[ASN][1000 genomes]
rs4453694	0.82[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.88[MEX][hapmap]
rs4465763	0.81[CHB][hapmap]
rs4510224	0.87[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4552188	0.94[ASN][1000 genomes]
rs4605370	0.99[ASN][1000 genomes]
rs4664066	0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.92[ASN][1000 genomes]
rs4664498	1.00[CEU][hapmap];0.85[JPT][hapmap];0.92[TSI][hapmap];0.89[EUR][1000 genomes]
rs4664499	0.82[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];0.88[MEX][hapmap];0.85[ASN][1000 genomes]
rs6433590	0.87[CHB][hapmap];0.90[JPT][hapmap];0.92[ASN][1000 genomes]
rs6711382	0.88[CEU][hapmap];0.86[CHD][hapmap];0.85[JPT][hapmap]
rs6711914	0.82[EUR][1000 genomes]
rs6712443	0.87[CEU][hapmap]
rs6712533	0.88[CEU][hapmap]
rs6715027	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6715607	0.92[ASN][1000 genomes]
rs6718439	0.92[ASN][1000 genomes]
rs6740508	0.99[ASN][1000 genomes]
rs6741567	0.85[ASN][1000 genomes]
rs6744121	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6749823	0.83[ASN][1000 genomes]
rs6755393	0.88[MEX][hapmap]
rs7424335	1.00[CEU][hapmap];0.95[JPT][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs7557801	0.92[ASN][1000 genomes]
rs7564630	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7580820	0.89[ASN][1000 genomes]
rs7581532	0.96[ASN][1000 genomes]
rs7583060	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7583148	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7592798	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9287998	0.99[ASN][1000 genomes]
rs9288006	1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.89[MEX][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934136	chr2:152308156-152664443	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1005746	chr2:152361972-153059840	Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv535984	chr2:152361972-153059840	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:152595800-152620200	Weak transcription	Primary B cells from cord blood	blood
2	chr2:152611000-152632400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr2:152611200-152620400	Weak transcription	Fetal Muscle Leg	muscle
4	chr2:152611600-152622600	Enhancers	K562	blood
5	chr2:152612000-152622200	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr2:152614600-152622000	Weak transcription	Fetal Lung	lung
7	chr2:152614600-152622200	Weak transcription	Left Ventricle	heart
8	chr2:152614600-152638000	Weak transcription	Pancreas	Pancrea
9	chr2:152615000-152622400	Weak transcription	Adipose Nuclei	Adipose
10	chr2:152615400-152622400	Weak transcription	Lung	lung
11	chr2:152615600-152623000	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr2:152616200-152619200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr2:152616600-152620200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr2:152616800-152619800	Weak transcription	Placenta	Placenta
15	chr2:152616800-152621400	Weak transcription	Fetal Stomach	stomach
16	chr2:152616800-152622200	Weak transcription	Fetal Muscle Trunk	muscle
17	chr2:152616800-152644400	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr2:152616800-152662400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr2:152617000-152620400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr2:152617000-152622200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr2:152617000-152622400	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr2:152617000-152622400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr2:152617000-152623000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr2:152617000-152632600	Weak transcription	Brain Hippocampus Middle	brain
25	chr2:152617000-152638000	Weak transcription	Esophagus	oesophagus
26	chr2:152617000-152669400	Weak transcription	Gastric	stomach
27	chr2:152617200-152619200	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr2:152617200-152619600	Weak transcription	HSMMtube	muscle
29	chr2:152617200-152621200	Weak transcription	Primary T cells from cord blood	blood
30	chr2:152617200-152622200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr2:152617200-152622200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr2:152617200-152622200	Weak transcription	Right Atrium	heart
33	chr2:152617200-152622400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr2:152617200-152622400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr2:152617200-152622600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr2:152617200-152622800	Weak transcription	Brain Anterior Caudate	brain
37	chr2:152618000-152619400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr2:152618200-152622200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr2:152618200-152631200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr2:152618400-152625200	Strong transcription	Aorta	Aorta
41	chr2:152618600-152619200	Strong transcription	Monocytes-CD14+_RO01746	blood
42	chr2:152618600-152620200	Weak transcription	Psoas Muscle	Psoas
43	chr2:152618800-152622400	Weak transcription	Fetal Intestine Small	intestine
44	chr2:152618800-152623000	Weak transcription	HepG2	liver
45	chr2:152619000-152622200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr2:152619000-152677400	Weak transcription	Brain Substantia Nigra	brain

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