Variant report

Variant	rs4552188
Chromosome Location	chr2:152600127-152600128
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10171724	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10172692	0.81[ASN][1000 genomes]
rs10180065	0.94[ASN][1000 genomes]
rs10184063	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10185966	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10198530	0.83[ASN][1000 genomes]
rs10198531	0.84[ASN][1000 genomes]
rs10754989	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11682909	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11894672	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11896217	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12470190	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12472627	0.87[ASN][1000 genomes]
rs12693116	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1523181	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1916301	0.87[ASN][1000 genomes]
rs1916302	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2030588	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2293221	0.86[ASN][1000 genomes]
rs3768658	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3922996	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3922997	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4233654	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4266011	0.88[ASN][1000 genomes]
rs4306714	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4393745	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4414677	0.94[ASN][1000 genomes]
rs4450595	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4453694	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4510224	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4605370	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4664066	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4664499	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6433590	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6715027	0.94[ASN][1000 genomes]
rs6715607	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6718439	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6740508	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6741567	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6749823	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6759419	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7557801	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7564630	0.94[ASN][1000 genomes]
rs7580820	0.84[ASN][1000 genomes]
rs7581532	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7583060	0.94[ASN][1000 genomes]
rs7583148	0.94[ASN][1000 genomes]
rs7592798	0.88[ASN][1000 genomes]
rs9287998	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9288006	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934136	chr2:152308156-152664443	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1005746	chr2:152361972-153059840	Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv535984	chr2:152361972-153059840	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:152584800-152610400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr2:152595800-152620200	Weak transcription	Primary B cells from cord blood	blood
3	chr2:152596000-152600800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr2:152596000-152603000	Weak transcription	Placenta	Placenta
5	chr2:152596400-152601600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr2:152596800-152610800	Weak transcription	Left Ventricle	heart
7	chr2:152597200-152618400	Weak transcription	Aorta	Aorta
8	chr2:152598200-152618600	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr2:152598600-152600200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links