Variant report

Variant	rs7557801
Chromosome Location	chr2:152586658-152586659
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:152585502..152587063-chr2:152681615..152683144,2	K562	blood:
2	chr2:152585426..152588067-chr2:152592929..152595399,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10172692	0.81[ASN][1000 genomes]
rs10180065	0.92[ASN][1000 genomes]
rs10184063	0.84[ASN][1000 genomes]
rs10185966	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10198530	0.80[ASN][1000 genomes]
rs10198531	0.82[ASN][1000 genomes]
rs10754989	0.82[ASN][1000 genomes]
rs11682909	0.84[ASN][1000 genomes]
rs11894672	0.81[ASN][1000 genomes]
rs11896217	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12470190	0.83[ASN][1000 genomes]
rs12472627	0.84[ASN][1000 genomes]
rs12693116	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1916301	0.84[ASN][1000 genomes]
rs1916302	0.85[ASN][1000 genomes]
rs2293221	0.84[ASN][1000 genomes]
rs3922996	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3922997	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4233654	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4266011	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4306714	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4393745	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4414677	0.92[ASN][1000 genomes]
rs4450595	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4453694	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4510224	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4552188	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4605370	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4664066	0.85[ASN][1000 genomes]
rs4664499	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6433590	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6715027	0.91[ASN][1000 genomes]
rs6715607	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6718439	0.84[ASN][1000 genomes]
rs6740508	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6741567	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6749823	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6759419	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7564630	0.92[ASN][1000 genomes]
rs7580820	0.81[ASN][1000 genomes]
rs7581532	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7583060	0.92[ASN][1000 genomes]
rs7583148	0.92[ASN][1000 genomes]
rs7592798	0.85[ASN][1000 genomes]
rs9287998	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9288006	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934136	chr2:152308156-152664443	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1005746	chr2:152361972-153059840	Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv535984	chr2:152361972-153059840	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv933357	chr2:152526786-152591138	Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:152583000-152587400	Transcr. at gene 5' and 3'	Skeletal Muscle Female	skeletal muscle
2	chr2:152584000-152588400	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr2:152584000-152588600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr2:152584000-152591000	Enhancers	Fetal Lung	lung
5	chr2:152584200-152587000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
6	chr2:152584200-152588200	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr2:152584200-152588200	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr2:152584200-152588400	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr2:152584600-152588000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr2:152584600-152588400	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr2:152584800-152588200	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr2:152584800-152610400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr2:152585000-152587600	Enhancers	Primary B cells from peripheral blood	blood
14	chr2:152585000-152588000	Enhancers	Primary B cells from cord blood	blood
15	chr2:152585200-152586800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr2:152585200-152587600	Enhancers	H9 Cell Line	embryonic stem cell
17	chr2:152585400-152587000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr2:152585400-152587400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr2:152585400-152587600	Enhancers	H1 Cell Line	embryonic stem cell
20	chr2:152585600-152587200	Genic enhancers	Fetal Muscle Leg	muscle
21	chr2:152585600-152587800	Weak transcription	Stomach Mucosa	stomach
22	chr2:152585800-152586800	Weak transcription	A549	lung
23	chr2:152585800-152587800	Enhancers	HSMMtube	muscle
24	chr2:152586000-152587000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr2:152586000-152587600	Enhancers	GM12878-XiMat	blood
26	chr2:152586200-152587800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr2:152586400-152587600	Weak transcription	Fetal Muscle Trunk	muscle
28	chr2:152586400-152588600	Weak transcription	Psoas Muscle	Psoas
29	chr2:152586400-152588600	Active TSS	Skeletal Muscle Male	skeletal muscle
30	chr2:152586600-152587200	Enhancers	Primary hematopoietic stem cells	blood
31	chr2:152586600-152587400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr2:152586600-152587400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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