Variant report

Variant	rs10168313
Chromosome Location	chr2:173387743-173387744
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10168348	1.00[AMR][1000 genomes]
rs10181394	1.00[AMR][1000 genomes]
rs10190285	1.00[AMR][1000 genomes]
rs10190352	1.00[AMR][1000 genomes]
rs10195845	1.00[AMR][1000 genomes]
rs10209090	1.00[AMR][1000 genomes]
rs10221599	1.00[AMR][1000 genomes]
rs13395403	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13411765	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13416167	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13419427	1.00[AMR][1000 genomes]
rs13426548	1.00[AMR][1000 genomes]
rs13428228	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1645790	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28537646	1.00[AMR][1000 genomes]
rs28588663	1.00[AMR][1000 genomes]
rs61307152	0.96[AFR][1000 genomes]
rs61343852	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6743214	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7584219	0.80[AFR][1000 genomes]
rs7591797	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7599077	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7599386	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173376400-173397400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:173387400-173395000	Weak transcription	Primary T cells from cord blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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