The 2.0 version of rSNPBase

Variant report

Variant rs13419427
Chromosome Location chr2:173322744-173322745
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:89 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:173312200-173323600 Genic enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
2 chr2:173313600-173323400 Genic enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
3 chr2:173315200-173324800 Genic enhancers NHEK skin
4 chr2:173316000-173322800 Enhancers ES-I3 Cell Line embryonic stem cell
5 chr2:173316200-173323400 Enhancers ES-UCSF4 Cell Line embryonic stem cell
6 chr2:173316200-173323800 Genic enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
7 chr2:173317000-173323800 Enhancers Stomach Mucosa stomach
8 chr2:173317200-173325400 Enhancers Primary T helper memory cells from peripheral blood 2 blood
9 chr2:173317600-173326000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
10 chr2:173317600-173326000 Weak transcription Brain Substantia Nigra brain
11 chr2:173317800-173323000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
12 chr2:173318800-173326200 Enhancers Primary T helper cells fromperipheralblood blood
13 chr2:173319200-173330600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
14 chr2:173319600-173324800 Enhancers Fetal Thymus thymus
15 chr2:173319800-173326400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
16 chr2:173320000-173325400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
17 chr2:173320200-173326600 Enhancers Duodenum Mucosa Duodenum
18 chr2:173320400-173324400 Weak transcription HUVEC blood vessel
19 chr2:173320600-173327200 Weak transcription Duodenum Smooth Muscle Duodenum
20 chr2:173320800-173325400 Enhancers HMEC breast
21 chr2:173320800-173326200 Weak transcription Placenta Amnion Placenta Amnion
22 chr2:173321000-173324400 Weak transcription Primary T regulatory cells fromperipheralblood blood
23 chr2:173321000-173325400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
24 chr2:173321000-173326000 Weak transcription HepG2 liver
25 chr2:173321000-173326400 Weak transcription Right Ventricle heart
26 chr2:173321000-173328000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
27 chr2:173321200-173323200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
28 chr2:173321200-173323200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
29 chr2:173321200-173324400 Weak transcription Primary monocytes fromperipheralblood blood
30 chr2:173321200-173324400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
31 chr2:173321200-173324600 Weak transcription Monocytes-CD14+_RO01746 blood
32 chr2:173321200-173325200 Weak transcription Hela-S3 cervix
33 chr2:173321200-173325400 Enhancers Primary T helper naive cells from peripheral blood blood
34 chr2:173321200-173325800 Weak transcription HUES64 Cell Line embryonic stem cell
35 chr2:173321200-173325800 Enhancers Primary T helper cells PMA-I stimulated --
36 chr2:173321200-173326200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
37 chr2:173321200-173326200 Weak transcription Skeletal Muscle Female skeletal muscle
38 chr2:173321200-173326400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
39 chr2:173321200-173327400 Weak transcription Small Intestine intestine
40 chr2:173321400-173322800 Weak transcription Colonic Mucosa Colon
41 chr2:173321400-173322800 Weak transcription Rectal Mucosa Donor 31 rectum
42 chr2:173321400-173323200 Weak transcription iPS-18 Cell Line embryonic stem cell
43 chr2:173321400-173323200 Weak transcription HSMM muscle
44 chr2:173321400-173323800 Weak transcription Esophagus oesophagus
45 chr2:173321400-173323800 Weak transcription Rectal Mucosa Donor 29 rectum
46 chr2:173321400-173324400 Weak transcription HUES6 Cell Line embryonic stem cell
47 chr2:173321400-173324400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
48 chr2:173321400-173324400 Weak transcription Pancreas Pancrea
49 chr2:173321400-173325400 Enhancers Primary T helper naive cells fromperipheralblood blood
50 chr2:173321400-173325400 Weak transcription Skeletal Muscle Male skeletal muscle

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Last update: Aug 31, 2015