Variant report

Variant	rs61343852
Chromosome Location	chr2:173376723-173376724
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10168313	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10168348	1.00[AMR][1000 genomes]
rs10181394	1.00[AMR][1000 genomes]
rs10190285	1.00[AMR][1000 genomes]
rs10190352	1.00[AMR][1000 genomes]
rs10195845	1.00[AMR][1000 genomes]
rs10209090	1.00[AMR][1000 genomes]
rs10221599	1.00[AMR][1000 genomes]
rs13395403	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13411765	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13416167	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13419427	1.00[AMR][1000 genomes]
rs13426548	1.00[AMR][1000 genomes]
rs13428228	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1645790	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28537646	1.00[AMR][1000 genomes]
rs28588663	1.00[AMR][1000 genomes]
rs61307152	0.96[AFR][1000 genomes]
rs6743214	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7584219	0.80[AFR][1000 genomes]
rs7591797	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7599077	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7599386	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173356400-173379200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:173372400-173377000	Weak transcription	Thymus	Thymus
3	chr2:173372600-173379600	Enhancers	Primary B cells from peripheral blood	blood
4	chr2:173375000-173380800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr2:173375200-173377600	ZNF genes & repeats	GM12878-XiMat	blood
6	chr2:173375400-173376800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
7	chr2:173375400-173378400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
8	chr2:173375400-173378800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
9	chr2:173375400-173379200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr2:173375600-173378400	ZNF genes & repeats	Liver	Liver
11	chr2:173375800-173377600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
12	chr2:173376000-173377000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
13	chr2:173376000-173377200	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
14	chr2:173376000-173378400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
15	chr2:173376000-173378800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
16	chr2:173376000-173379000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
17	chr2:173376200-173377200	ZNF genes & repeats	Brain Substantia Nigra	brain
18	chr2:173376200-173377400	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr2:173376200-173378600	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr2:173376400-173376800	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
21	chr2:173376400-173378400	ZNF genes & repeats	Primary B cells from cord blood	blood
22	chr2:173376400-173397400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr2:173376600-173376800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr2:173376600-173376800	ZNF genes & repeats	HSMMtube	muscle
25	chr2:173376600-173377000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr2:173376600-173377000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr2:173376600-173377200	ZNF genes & repeats	Primary T cells from cord blood	blood

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