Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10168313	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10168348	1.00[AMR][1000 genomes]
rs10181394	1.00[AMR][1000 genomes]
rs10190285	1.00[AMR][1000 genomes]
rs10190352	1.00[AMR][1000 genomes]
rs10195845	0.85[MKK][hapmap];1.00[AMR][1000 genomes]
rs10209090	1.00[AMR][1000 genomes]
rs10221599	0.82[LWK][hapmap];0.85[MKK][hapmap];0.84[YRI][hapmap];1.00[AMR][1000 genomes]
rs12477247	1.00[ASW][hapmap];0.86[YRI][hapmap]
rs13395403	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13416167	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13419427	1.00[AMR][1000 genomes]
rs13426548	1.00[AMR][1000 genomes]
rs13428228	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1645790	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28537646	1.00[AMR][1000 genomes]
rs28588663	1.00[AMR][1000 genomes]
rs61307152	0.95[AFR][1000 genomes]
rs61343852	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6743214	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6755100	0.92[YRI][hapmap]
rs7591797	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7599077	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7599386	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173376400-173397400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:173387400-173395000	Weak transcription	Primary T cells from cord blood	blood
3	chr2:173390600-173391800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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