Variant report
| Variant | rs10173178 |
|---|---|
| Chromosome Location | chr2:209259007-209259008 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10165447 | 1.00[CEU][hapmap];0.89[EUR][1000 genomes] |
| rs11887246 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11893137 | 1.00[CEU][hapmap] |
| rs11900211 | 1.00[CEU][hapmap] |
| rs11903831 | 1.00[CEU][hapmap] |
| rs12995209 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs12995408 | 1.00[CEU][hapmap];0.85[YRI][hapmap] |
| rs13014969 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs13034777 | 1.00[CEU][hapmap] |
| rs1370373 | 1.00[CEU][hapmap];0.89[EUR][1000 genomes] |
| rs16840789 | 1.00[CEU][hapmap] |
| rs16840913 | 1.00[CEU][hapmap] |
| rs16841205 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
| rs16841217 | 1.00[CEU][hapmap] |
| rs16841273 | 0.89[EUR][1000 genomes] |
| rs34076187 | 0.89[EUR][1000 genomes] |
| rs34279443 | 1.00[EUR][1000 genomes] |
| rs34757991 | 0.89[EUR][1000 genomes] |
| rs35344600 | 1.00[EUR][1000 genomes] |
| rs6736496 | 1.00[EUR][1000 genomes] |
| rs71418693 | 0.89[EUR][1000 genomes] |
| rs73983779 | 1.00[EUR][1000 genomes] |
| rs7578542 | 1.00[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv534496 | chr2:208814372-209302791 | Strong transcription Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 40 gene(s) | inside rSNPs | diseases |
| 2 | nsv584297 | chr2:209020181-209316760 | Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 26 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:209258600-209259400 | ZNF genes & repeats | iPS DF 19.11 Cell Line | embryonic stem cell |
