Variant report

Variant	rs13014969
Chromosome Location	chr2:209248421-209248422
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10165447	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs10173178	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11887246	1.00[CEU][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11893137	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs11900211	1.00[CEU][hapmap]
rs11903831	1.00[CEU][hapmap]
rs12995209	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12995408	1.00[CEU][hapmap];0.83[YRI][hapmap]
rs13034777	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs1370373	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs16840789	1.00[CEU][hapmap]
rs16840913	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs16841205	1.00[CEU][hapmap];0.92[YRI][hapmap]
rs16841217	1.00[CEU][hapmap]
rs16841273	0.89[EUR][1000 genomes]
rs34076187	0.89[EUR][1000 genomes]
rs34279443	1.00[EUR][1000 genomes]
rs34757991	0.89[EUR][1000 genomes]
rs35344600	1.00[EUR][1000 genomes]
rs6736496	1.00[EUR][1000 genomes]
rs71418693	0.89[EUR][1000 genomes]
rs73983779	1.00[EUR][1000 genomes]
rs7578542	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534496	chr2:208814372-209302791	Strong transcription Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv584297	chr2:209020181-209316760	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv437315	chr2:209204714-209249613	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	esv2760598	chr2:209237587-209248803	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv963971	chr2:209245277-209250643	Enhancers Weak transcription Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv962520	chr2:209245277-209253106	Weak transcription Bivalent/Poised TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:209245600-209249400	Weak transcription	Pancreas	Pancrea

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