Variant report

Variant	rs11887246
Chromosome Location	chr2:209292448-209292449
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10165447	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs10173178	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11893137	1.00[CEU][hapmap]
rs11900211	1.00[CEU][hapmap]
rs11903831	1.00[CEU][hapmap]
rs12995209	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12995408	1.00[CEU][hapmap];0.85[YRI][hapmap]
rs13014969	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13034777	1.00[CEU][hapmap]
rs1370373	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs16840789	1.00[CEU][hapmap]
rs16840913	1.00[CEU][hapmap]
rs16841205	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs16841217	1.00[CEU][hapmap]
rs16841273	0.89[EUR][1000 genomes]
rs34076187	0.89[EUR][1000 genomes]
rs34279443	1.00[EUR][1000 genomes]
rs34757991	0.89[EUR][1000 genomes]
rs35344600	1.00[EUR][1000 genomes]
rs6736496	1.00[EUR][1000 genomes]
rs71418693	0.89[EUR][1000 genomes]
rs73983779	1.00[EUR][1000 genomes]
rs7578542	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534496	chr2:208814372-209302791	Strong transcription Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv584297	chr2:209020181-209316760	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:209292000-209293200	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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