Variant report
| Variant | rs16841273 |
|---|---|
| Chromosome Location | chr2:209339817-209339818 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:209339603..209341733-chr2:209501873..209504107,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10165447 | 1.00[EUR][1000 genomes] |
| rs10173178 | 0.89[EUR][1000 genomes] |
| rs11887246 | 0.89[EUR][1000 genomes] |
| rs12995209 | 0.89[EUR][1000 genomes] |
| rs13014969 | 0.89[EUR][1000 genomes] |
| rs13016164 | 1.00[AMR][1000 genomes] |
| rs13032946 | 1.00[AMR][1000 genomes] |
| rs13035863 | 1.00[AMR][1000 genomes] |
| rs13400148 | 0.89[EUR][1000 genomes] |
| rs1370373 | 1.00[EUR][1000 genomes] |
| rs34029972 | 1.00[AMR][1000 genomes] |
| rs34076187 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs34279443 | 0.89[EUR][1000 genomes] |
| rs34338022 | 1.00[AMR][1000 genomes] |
| rs34661013 | 1.00[AMR][1000 genomes] |
| rs34757991 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs35344600 | 0.89[EUR][1000 genomes] |
| rs36054909 | 1.00[AMR][1000 genomes] |
| rs55849328 | 1.00[AMR][1000 genomes] |
| rs6736496 | 0.89[EUR][1000 genomes] |
| rs71418693 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs71418695 | 1.00[AMR][1000 genomes] |
| rs73983726 | 1.00[AMR][1000 genomes] |
| rs73983759 | 1.00[AMR][1000 genomes] |
| rs73983779 | 0.89[EUR][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:209331400-209342000 | Weak transcription | Pancreas | Pancrea |
